Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K5A55_RS05525 | Genome accession | NZ_CP081306 |
| Coordinates | 1131141..1132202 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain Ec1079 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1124132..1186095 | 1131141..1132202 | within | 0 |
Gene organization within MGE regions
Location: 1124132..1186095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5A55_RS05480 (K5A55_05480) | gutQ | 1124132..1125097 (-) | 966 | WP_001287415.1 | arabinose-5-phosphate isomerase GutQ | - |
| K5A55_RS05485 (K5A55_05485) | srlR | 1125090..1125863 (-) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| K5A55_RS05490 (K5A55_05490) | gutM | 1125930..1126289 (-) | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| K5A55_RS05495 (K5A55_05495) | srlD | 1126394..1127173 (-) | 780 | WP_001077342.1 | sorbitol-6-phosphate dehydrogenase | - |
| K5A55_RS05500 (K5A55_05500) | srlB | 1127177..1127548 (-) | 372 | WP_000216201.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| K5A55_RS05505 (K5A55_05505) | srlE | 1127559..1128518 (-) | 960 | WP_000196934.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| K5A55_RS05510 (K5A55_05510) | srlA | 1128515..1129078 (-) | 564 | WP_000573325.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| K5A55_RS05515 (K5A55_05515) | mltB | 1129334..1130419 (+) | 1086 | WP_001299653.1 | lytic murein transglycosylase B | - |
| K5A55_RS05520 (K5A55_05520) | pncC | 1130564..1131061 (+) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| K5A55_RS05525 (K5A55_05525) | recA | 1131141..1132202 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| K5A55_RS05530 (K5A55_05530) | recX | 1132445..1132945 (+) | 501 | WP_000140519.1 | recombination regulator RecX | - |
| K5A55_RS05535 (K5A55_05535) | alaS | 1133073..1135703 (+) | 2631 | WP_000047176.1 | alanine--tRNA ligase | - |
| K5A55_RS05540 (K5A55_05540) | csrA | 1135938..1136123 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| K5A55_RS05570 (K5A55_05570) | yqaB | 1137581..1138147 (+) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| K5A55_RS05575 (K5A55_05575) | yqaA | 1138144..1138572 (+) | 429 | WP_001287457.1 | YqaA family protein | - |
| K5A55_RS05580 (K5A55_05580) | gshA | 1138645..1140201 (+) | 1557 | WP_000611802.1 | glutamate--cysteine ligase | - |
| K5A55_RS05585 (K5A55_05585) | luxS | 1140351..1140866 (+) | 516 | WP_001130207.1 | S-ribosylhomocysteine lyase | - |
| K5A55_RS05590 (K5A55_05590) | emrB | 1140930..1142468 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| K5A55_RS05595 (K5A55_05595) | emrA | 1142485..1143657 (-) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| K5A55_RS05600 (K5A55_05600) | emrR | 1143784..1144314 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| K5A55_RS05605 (K5A55_05605) | ygaH | 1144405..1144740 (-) | 336 | WP_000119750.1 | L-valine transporter subunit YgaH | - |
| K5A55_RS05610 (K5A55_05610) | ygaZ | 1144730..1145467 (-) | 738 | WP_000445658.1 | L-valine exporter subunit YgaZ | - |
| K5A55_RS05615 (K5A55_05615) | - | 1145591..1146775 (-) | 1185 | WP_000165699.1 | MFS transporter | - |
| K5A55_RS05620 (K5A55_05620) | proX | 1147067..1148059 (-) | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| K5A55_RS05625 (K5A55_05625) | proW | 1148117..1149181 (-) | 1065 | WP_000774978.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| K5A55_RS05630 (K5A55_05630) | proV | 1149174..1150376 (-) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| K5A55_RS05635 (K5A55_05635) | nrdF | 1150731..1151690 (-) | 960 | WP_000777965.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| K5A55_RS05640 (K5A55_05640) | nrdE | 1151700..1153844 (-) | 2145 | WP_060621148.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| K5A55_RS05645 (K5A55_05645) | nrdI | 1153817..1154227 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| K5A55_RS05650 (K5A55_05650) | nrdH | 1154224..1154469 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| K5A55_RS05655 (K5A55_05655) | ygaM | 1154717..1155046 (-) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| K5A55_RS05660 (K5A55_05660) | ygaC | 1155198..1155542 (+) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| K5A55_RS05665 (K5A55_05665) | alaE | 1155579..1156028 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| K5A55_RS05670 (K5A55_05670) | stpA | 1156696..1157100 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| K5A55_RS05675 (K5A55_05675) | ygaP | 1157147..1157671 (-) | 525 | WP_001229444.1 | thiosulfate sulfurtransferase YgaP | - |
| K5A55_RS05680 (K5A55_05680) | ygaV | 1157681..1157980 (-) | 300 | WP_000137280.1 | helix-turn-helix transcriptional regulator | - |
| K5A55_RS05685 (K5A55_05685) | yqaE | 1158163..1158321 (+) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| K5A55_RS05690 (K5A55_05690) | kbp | 1158405..1158854 (+) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| K5A55_RS05695 (K5A55_05695) | csiR | 1158855..1159517 (-) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| K5A55_RS05700 (K5A55_05700) | gabP | 1159538..1160938 (-) | 1401 | WP_001295173.1 | GABA permease | - |
| K5A55_RS05705 (K5A55_05705) | gabT | 1161176..1162456 (-) | 1281 | WP_000097660.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| K5A55_RS05710 (K5A55_05710) | gabD | 1162470..1163918 (-) | 1449 | WP_000772854.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| K5A55_RS05715 (K5A55_05715) | lhgO | 1163941..1165209 (-) | 1269 | WP_000271984.1 | L-2-hydroxyglutarate oxidase | - |
| K5A55_RS05720 (K5A55_05720) | glaH | 1165229..1166206 (-) | 978 | WP_001315804.1 | glutarate dioxygenase GlaH | - |
| K5A55_RS05725 (K5A55_05725) | - | 1166542..1168794 (-) | 2253 | Protein_1122 | alpha amylase C-terminal domain-containing protein | - |
| K5A55_RS05730 (K5A55_05730) | - | 1169057..1169967 (+) | 911 | Protein_1123 | IS3-like element IS2 family transposase | - |
| K5A55_RS05740 (K5A55_05740) | - | 1171226..1171546 (+) | 321 | Protein_1125 | integrase core domain-containing protein | - |
| K5A55_RS05745 (K5A55_05745) | - | 1171517..1172386 (-) | 870 | WP_001356251.1 | ankyrin repeat domain-containing protein | - |
| K5A55_RS05750 (K5A55_05750) | - | 1172906..1173570 (+) | 665 | WP_223349789.1 | IS1 family transposase | - |
| K5A55_RS05755 (K5A55_05755) | - | 1173616..1176855 (-) | 3240 | WP_001096907.1 | type I restriction endonuclease subunit R | - |
| K5A55_RS05760 (K5A55_05760) | - | 1176914..1178107 (-) | 1194 | WP_001356249.1 | restriction endonuclease subunit S | - |
| K5A55_RS05765 (K5A55_05765) | - | 1178104..1179651 (-) | 1548 | WP_000101606.1 | class I SAM-dependent DNA methyltransferase | - |
| K5A55_RS05770 (K5A55_05770) | - | 1179863..1180132 (+) | 270 | Protein_1131 | integrase core domain-containing protein | - |
| K5A55_RS05775 (K5A55_05775) | - | 1181248..1182144 (-) | 897 | WP_000614783.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| K5A55_RS05780 (K5A55_05780) | - | 1182141..1183037 (-) | 897 | WP_000936465.1 | ParB/RepB/Spo0J family partition protein | - |
| K5A55_RS05785 (K5A55_05785) | - | 1183027..1184583 (-) | 1557 | WP_000135615.1 | recombinase family protein | - |
| K5A55_RS05790 (K5A55_05790) | - | 1184866..1186095 (-) | 1230 | WP_221582539.1 | integrase domain-containing protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=595946 K5A55_RS05525 WP_000963143.1 1131141..1132202(+) (recA) [Escherichia coli strain Ec1079]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=595946 K5A55_RS05525 WP_000963143.1 1131141..1132202(+) (recA) [Escherichia coli strain Ec1079]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.