Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K2F33_RS28550 Genome accession   NZ_CP081301
Coordinates   6212389..6213450 (-) Length   353 a.a.
NCBI ID   WP_145021827.1    Uniprot ID   -
Organism   Paenibacillus sp. PSB04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6207389..6218450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2F33_RS28530 (K2F33_28435) - 6208328..6208588 (-) 261 WP_006286829.1 stage V sporulation protein S -
  K2F33_RS28535 (K2F33_28440) - 6208720..6209514 (-) 795 WP_145023162.1 TIGR00282 family metallophosphoesterase -
  K2F33_RS28540 (K2F33_28445) rny 6209585..6211126 (-) 1542 WP_076167981.1 ribonuclease Y -
  K2F33_RS28545 (K2F33_28450) - 6211453..6212229 (-) 777 WP_263880243.1 regulatory protein RecX -
  K2F33_RS28550 (K2F33_28455) recA 6212389..6213450 (-) 1062 WP_145021827.1 recombinase RecA Machinery gene
  K2F33_RS28555 (K2F33_28460) - 6213784..6215070 (-) 1287 WP_192714727.1 competence/damage-inducible protein A -
  K2F33_RS28560 (K2F33_28465) pgsA 6215199..6215786 (-) 588 WP_076167990.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K2F33_RS28565 (K2F33_28470) - 6216042..6216533 (-) 492 WP_076169539.1 YajQ family cyclic di-GMP-binding protein -
  K2F33_RS28570 (K2F33_28475) - 6216761..6216931 (-) 171 WP_163872676.1 hypothetical protein -
  K2F33_RS28575 (K2F33_28480) - 6217032..6218138 (-) 1107 WP_145134874.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38047.35 Da        Isoelectric Point: 4.8578

>NTDB_id=595855 K2F33_RS28550 WP_145021827.1 6212389..6213450(-) (recA) [Paenibacillus sp. PSB04]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEVVPSGSLALDIALGIGGLPRGRVVEVYGPESSGKTTVALHAIAE
VQKVGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAIAKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKMGNDVVGNRT
RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFLKENQPISEAIENK
IREASNLTTTVSAPTAEEAAAEEREEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=595855 K2F33_RS28550 WP_145021827.1 6212389..6213450(-) (recA) [Paenibacillus sp. PSB04]
TTGTCAGATCGTCGTGCTGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCGATTATGAAACT
CGGTGAGTCGACACATATGCAGGTGGAAGTTGTTCCCAGCGGCTCCCTGGCTCTAGATATAGCACTTGGTATTGGCGGAC
TTCCAAGAGGCCGCGTTGTTGAAGTATATGGACCGGAATCTTCCGGTAAGACGACGGTGGCCCTCCATGCCATCGCTGAA
GTACAGAAAGTCGGTGGACAAGCTGCTTTCATCGATGCGGAGCATGCGCTTGATCCGTCGTATGCCAACAAGCTTGGCGT
CAACATTGACGAGCTGCTGCTGTCTCAACCGGACACCGGTGAGCAGGCGTTGGAAATTGCGGAAGCCCTCGTACGCAGCG
GCGCCGTTGATATTATCGTCGTGGACTCGGTTGCCGCGCTCGTACCGAAAGCGGAAATCGAAGGCGAAATGGGGGATTCC
CACGTAGGTCTGCAGGCTCGTCTGATGTCCCAGGCACTGCGTAAGCTGTCCGGTGCGATTGCGAAGTCGAAGACGATTGC
GATCTTTATCAACCAGCTTCGTGAGAAAGTCGGCGTCATGTTCGGGAACCCGGAGACGACCCCTGGTGGCCGTGCGCTGA
AGTTCTATTCTTCCGTTCGTCTGGATGTACGCCGTATTGAGAGCATCAAGATGGGCAATGATGTAGTGGGTAACCGTACG
CGGATCAAGGTCGTCAAGAACAAGGTGGCTCCTCCGTTCAAGCAGGCGGAGATCGACATCATGTACGGCGAAGGCATTTC
CAAGGAAGGCAGCATTATCGATATCGGTACGGAATTGGATATCGTCAATAAGAGCGGTGCCTGGTACTCCTATGAAGGCG
AGCGCCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAAGAAAATCAGCCTATTTCGGAAGCGATCGAGAACAAG
ATCCGTGAGGCAAGCAATTTGACGACGACGGTGAGCGCGCCGACCGCAGAGGAAGCAGCGGCCGAGGAACGCGAAGAGCA
GGAATTGTTAGAGCTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.709

92.635

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

71.006

95.751

0.68
  recA Streptococcus mutans UA159

64.345

100

0.654
  recA Streptococcus mitis SK321

65.903

98.867

0.652
  recA Streptococcus pyogenes NZ131

64.957

99.433

0.646
  recA Streptococcus pneumoniae D39

68.485

93.484

0.64
  recA Streptococcus pneumoniae R6

68.485

93.484

0.64
  recA Streptococcus pneumoniae TIGR4

68.485

93.484

0.64
  recA Streptococcus pneumoniae Rx1

68.485

93.484

0.64
  recA Streptococcus mitis NCTC 12261

69.231

92.068

0.637
  recA Neisseria gonorrhoeae MS11

65.217

97.734

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.217

97.734

0.637
  recA Neisseria gonorrhoeae MS11

65.217

97.734

0.637
  recA Lactococcus lactis subsp. cremoris KW2

67.576

93.484

0.632
  recA Ralstonia pseudosolanacearum GMI1000

68.519

91.785

0.629
  recA Acinetobacter baylyi ADP1

63.068

99.717

0.629
  recA Acinetobacter baumannii D1279779

62.356

98.584

0.615
  recA Glaesserella parasuis strain SC1401

61.254

99.433

0.609
  recA Vibrio cholerae strain A1552

66.978

90.935

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

90.935

0.609
  recA Pseudomonas stutzeri DSM 10701

62.647

96.317

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.832

92.635

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.947

95.751

0.584
  recA Helicobacter pylori 26695

62.539

91.501

0.572
  recA Helicobacter pylori strain NCTC11637

62.229

91.501

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

91.501

0.558