Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K3720_RS09045 Genome accession   NZ_CP081064
Coordinates   1821759..1822826 (-) Length   355 a.a.
NCBI ID   WP_027237553.1    Uniprot ID   A0A9Q9M4D7
Organism   Leisingera caerulea strain M561     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1816759..1827826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3720_RS09035 (K3720_09015) - 1818584..1818871 (-) 288 WP_174147010.1 DUF1330 domain-containing protein -
  K3720_RS09040 (K3720_09020) alaS 1818950..1821601 (-) 2652 WP_259959273.1 alanine--tRNA ligase -
  K3720_RS09045 (K3720_09025) recA 1821759..1822826 (-) 1068 WP_027237553.1 recombinase RecA Machinery gene
  K3720_RS09050 (K3720_09030) - 1823020..1823619 (+) 600 WP_259959274.1 gamma-glutamyl kinase -
  K3720_RS09055 (K3720_09035) - 1823673..1825988 (-) 2316 WP_027237551.1 ATP-binding protein -
  K3720_RS09060 (K3720_09040) - 1826085..1827257 (-) 1173 WP_259959275.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38059.56 Da        Isoelectric Point: 4.8683

>NTDB_id=595255 K3720_RS09045 WP_027237553.1 1821759..1822826(-) (recA) [Leisingera caerulea strain M561]
MADLLTMKNKVSGDKQKALDSALAQIERQFGKGSIMKLGDGTALQEIEASSTGSLGLDIALGIGGLPMGRIIEIYGPESS
GKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALT
PKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGA
IKDRDEVVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGRENAKVFLR
ENPAIAYDIEDKIRASHGLEFERPDLDGADDILEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=595255 K3720_RS09045 WP_027237553.1 1821759..1822826(-) (recA) [Leisingera caerulea strain M561]
ATGGCGGATCTTTTGACCATGAAAAATAAAGTAAGCGGTGACAAGCAAAAGGCGCTCGACAGCGCGCTTGCCCAGATTGA
GCGGCAGTTCGGCAAGGGCTCCATCATGAAGCTCGGCGATGGCACAGCCCTGCAGGAGATCGAGGCCAGTTCGACCGGCT
CCCTGGGGCTGGACATCGCGCTGGGGATCGGCGGCCTGCCGATGGGCCGGATCATCGAAATTTACGGGCCCGAAAGCTCG
GGCAAGACCACGCTGACGCTGCATTGCATTGCGGAACAGCAGAAAAAGGGCGGTGTCTGCGCCTTTGTCGACGCGGAACA
CGCGCTGGACCCTCAGTATGCGGCCAAGCTGGGCGTCGATCTGGATGAGCTGCTGATCTCGCAGCCAGACACCGGTGAGC
AGGCGCTGGAAATCACTGACACGCTGGTGCGTTCCGGCGCGGTCAACATGGTGATTGTCGACTCGGTGGCGGCACTGACC
CCCAAGTCGGAGCTTGAGGGCGACATGGGCGACAGCAGCGTCGGCGTGCAGGCCCGCCTGATGAGCCAGGCGATGCGCAA
GCTGACCGGCTCCATCAGCCGCTCCAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCTCCCCCGAAACCACCACCGGCGGCAACGCGCTGAAATTCTACTCCTCCGTCCGCCTGGACATCCGCCGCATCGGCGCG
ATCAAGGACCGGGACGAGGTGGTCGGCAACTCCACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCA
GGTGGAATTCGACATCATGTATGGCGAGGGCATCTCCAAGATGGGCGAACTGCTGGACCTGGGCGTGGCGGCCGGTGTCG
TCAACAAGTCCGGCGCCTGGTTCTCCTACGGGGATGAGCGGATCGGGCAGGGGCGGGAGAACGCCAAGGTGTTCCTGCGC
GAAAACCCCGCCATTGCCTATGATATCGAGGACAAGATCCGCGCGTCGCACGGGCTGGAATTCGAACGCCCGGATCTGGA
CGGCGCCGACGATATCCTCGAGGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

70.27

93.803

0.659
  recA Neisseria gonorrhoeae strain FA1090

70.27

93.803

0.659
  recA Neisseria gonorrhoeae MS11

70.27

93.803

0.659
  recA Glaesserella parasuis strain SC1401

72.05

90.704

0.654
  recA Acinetobacter baylyi ADP1

66.279

96.901

0.642
  recA Pseudomonas stutzeri DSM 10701

70.807

90.704

0.642
  recA Acinetobacter baumannii D1279779

69.782

90.423

0.631
  recA Vibrio cholerae strain A1552

69.782

90.423

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

90.423

0.631
  recA Ralstonia pseudosolanacearum GMI1000

71.019

88.451

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

67.584

92.113

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.258

91.831

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.549

92.394

0.606
  recA Helicobacter pylori strain NCTC11637

65.951

91.831

0.606
  recA Helicobacter pylori 26695

65.337

91.831

0.6
  recA Streptococcus pneumoniae Rx1

60.588

95.775

0.58
  recA Streptococcus pneumoniae D39

60.588

95.775

0.58
  recA Streptococcus pneumoniae R6

60.588

95.775

0.58
  recA Streptococcus pneumoniae TIGR4

60.588

95.775

0.58
  recA Streptococcus mitis NCTC 12261

60.831

94.93

0.577
  recA Streptococcus mitis SK321

60.534

94.93

0.575
  recA Lactococcus lactis subsp. cremoris KW2

59.941

94.93

0.569
  recA Streptococcus mutans UA159

60.479

94.085

0.569
  recA Streptococcus pyogenes NZ131

59.226

94.648

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

91.831

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

91.268

0.535