Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K2216_RS06845 | Genome accession | NZ_CP081023 |
| Coordinates | 1454385..1455431 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CD060 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1428871..1490647 | 1454385..1455431 | within | 0 |
Gene organization within MGE regions
Location: 1428871..1490647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2216_RS06740 (K2216_06765) | rimP | 1432619..1433080 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| K2216_RS06745 (K2216_06770) | nusA | 1433110..1434264 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| K2216_RS06750 (K2216_06775) | rnpM | 1434271..1434552 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| K2216_RS06755 (K2216_06780) | - | 1434542..1434853 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| K2216_RS06760 (K2216_06785) | infB | 1434875..1436815 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| K2216_RS06765 (K2216_06790) | rbfA | 1436858..1437238 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| K2216_RS06770 (K2216_06795) | - | 1437219..1438202 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| K2216_RS06775 (K2216_06800) | truB | 1438215..1439120 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| K2216_RS06780 (K2216_06805) | - | 1439251..1440180 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K2216_RS06785 (K2216_06810) | rpsO | 1440284..1440541 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| K2216_RS06790 (K2216_06815) | - | 1440781..1441632 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| K2216_RS06795 (K2216_06820) | pnp | 1441757..1443868 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| K2216_RS06800 (K2216_06825) | - | 1444134..1444877 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| K2216_RS06805 (K2216_06830) | - | 1445035..1446282 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| K2216_RS06810 (K2216_06835) | - | 1446317..1446562 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| K2216_RS06815 (K2216_06840) | dapG | 1446572..1447795 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| K2216_RS06820 (K2216_06845) | - | 1447908..1448642 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| K2216_RS06825 (K2216_06850) | - | 1448765..1451179 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| K2216_RS06830 (K2216_06855) | mnmH | 1451182..1452240 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| K2216_RS06835 (K2216_06860) | rimO | 1452234..1453568 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| K2216_RS06840 (K2216_06865) | pgsA | 1453555..1454097 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| K2216_RS06845 (K2216_06870) | recA | 1454385..1455431 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| K2216_RS06850 (K2216_06875) | rny | 1455607..1457148 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| K2216_RS06855 (K2216_06880) | - | 1457783..1459564 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| K2216_RS06860 (K2216_06885) | lepB | 1459646..1460176 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| K2216_RS06865 (K2216_06890) | - | 1460216..1461040 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| K2216_RS06870 (K2216_06895) | - | 1461297..1462205 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| K2216_RS06875 (K2216_06900) | purB | 1462349..1463794 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| K2216_RS06880 (K2216_06905) | - | 1464105..1464557 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K2216_RS06885 (K2216_06910) | - | 1464961..1466538 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| K2216_RS06890 (K2216_06915) | - | 1466686..1467438 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| K2216_RS06895 (K2216_06920) | - | 1467577..1468938 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| K2216_RS06900 (K2216_06925) | - | 1469029..1470225 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K2216_RS06905 (K2216_06930) | galT | 1470610..1471560 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| K2216_RS06910 (K2216_06935) | - | 1471713..1472465 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| K2216_RS06915 (K2216_06940) | - | 1472557..1473333 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| K2216_RS06920 (K2216_06945) | - | 1473648..1475546 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| K2216_RS06925 (K2216_06950) | - | 1475674..1476795 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| K2216_RS06930 (K2216_06955) | - | 1476994..1477326 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| K2216_RS06935 (K2216_06960) | - | 1477313..1478371 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| K2216_RS06940 (K2216_06965) | - | 1478364..1479434 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| K2216_RS06945 (K2216_06970) | - | 1479536..1480072 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| K2216_RS06950 (K2216_06975) | - | 1480188..1480895 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| K2216_RS06955 (K2216_06980) | - | 1480897..1481613 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| K2216_RS06960 (K2216_06985) | - | 1481615..1482373 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| K2216_RS06965 (K2216_06990) | - | 1482508..1483896 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| K2216_RS06970 (K2216_06995) | - | 1483972..1484793 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| K2216_RS06975 (K2216_07000) | - | 1485044..1486198 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| K2216_RS06980 (K2216_07005) | - | 1486381..1486581 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| K2216_RS06985 (K2216_07010) | - | 1487002..1487430 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| K2216_RS06990 (K2216_07015) | - | 1487573..1488328 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| K2216_RS06995 (K2216_07020) | - | 1488449..1488865 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| K2216_RS07000 (K2216_07025) | - | 1489029..1489535 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K2216_RS07005 (K2216_07030) | - | 1489617..1489937 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| K2216_RS07010 (K2216_07035) | - | 1490106..1490303 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=595207 K2216_RS06845 WP_003428218.1 1454385..1455431(+) (recA) [Clostridioides difficile strain CD060]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=595207 K2216_RS06845 WP_003428218.1 1454385..1455431(+) (recA) [Clostridioides difficile strain CD060]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.