Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K2215_RS06850 | Genome accession | NZ_CP081021 |
| Coordinates | 1454565..1455611 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain G89 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1429051..1490827 | 1454565..1455611 | within | 0 |
Gene organization within MGE regions
Location: 1429051..1490827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2215_RS06745 (K2215_06765) | rimP | 1432799..1433260 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| K2215_RS06750 (K2215_06770) | nusA | 1433290..1434444 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| K2215_RS06755 (K2215_06775) | rnpM | 1434451..1434732 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| K2215_RS06760 (K2215_06780) | - | 1434722..1435033 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| K2215_RS06765 (K2215_06785) | infB | 1435055..1436995 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| K2215_RS06770 (K2215_06790) | rbfA | 1437038..1437418 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| K2215_RS06775 (K2215_06795) | - | 1437399..1438382 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| K2215_RS06780 (K2215_06800) | truB | 1438395..1439300 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| K2215_RS06785 (K2215_06805) | - | 1439431..1440360 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K2215_RS06790 (K2215_06810) | rpsO | 1440464..1440721 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| K2215_RS06795 (K2215_06815) | - | 1440961..1441812 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| K2215_RS06800 (K2215_06820) | pnp | 1441937..1444048 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| K2215_RS06805 (K2215_06825) | - | 1444314..1445057 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| K2215_RS06810 (K2215_06830) | - | 1445215..1446462 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| K2215_RS06815 (K2215_06835) | - | 1446497..1446742 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| K2215_RS06820 (K2215_06840) | dapG | 1446752..1447975 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| K2215_RS06825 (K2215_06845) | - | 1448088..1448822 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| K2215_RS06830 (K2215_06850) | - | 1448945..1451359 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| K2215_RS06835 (K2215_06855) | mnmH | 1451362..1452420 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| K2215_RS06840 (K2215_06860) | rimO | 1452414..1453748 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| K2215_RS06845 (K2215_06865) | pgsA | 1453735..1454277 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| K2215_RS06850 (K2215_06870) | recA | 1454565..1455611 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| K2215_RS06855 (K2215_06875) | rny | 1455787..1457328 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| K2215_RS06860 (K2215_06880) | - | 1457963..1459744 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| K2215_RS06865 (K2215_06885) | lepB | 1459826..1460356 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| K2215_RS06870 (K2215_06890) | - | 1460396..1461220 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| K2215_RS06875 (K2215_06895) | - | 1461477..1462385 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| K2215_RS06880 (K2215_06900) | purB | 1462529..1463974 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| K2215_RS06885 (K2215_06905) | - | 1464285..1464737 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K2215_RS06890 (K2215_06910) | - | 1465141..1466718 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| K2215_RS06895 (K2215_06915) | - | 1466866..1467618 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| K2215_RS06900 (K2215_06920) | - | 1467757..1469118 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| K2215_RS06905 (K2215_06925) | - | 1469209..1470405 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K2215_RS06910 (K2215_06930) | galT | 1470790..1471740 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| K2215_RS06915 (K2215_06935) | - | 1471893..1472645 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| K2215_RS06920 (K2215_06940) | - | 1472737..1473513 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| K2215_RS06925 (K2215_06945) | - | 1473828..1475726 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| K2215_RS06930 (K2215_06950) | - | 1475854..1476975 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| K2215_RS06935 (K2215_06955) | - | 1477174..1477506 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| K2215_RS06940 (K2215_06960) | - | 1477493..1478551 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| K2215_RS06945 (K2215_06965) | - | 1478544..1479614 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| K2215_RS06950 (K2215_06970) | - | 1479716..1480252 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| K2215_RS06955 (K2215_06975) | - | 1480368..1481075 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| K2215_RS06960 (K2215_06980) | - | 1481077..1481793 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| K2215_RS06965 (K2215_06985) | - | 1481795..1482553 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| K2215_RS06970 (K2215_06990) | - | 1482688..1484076 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| K2215_RS06975 (K2215_06995) | - | 1484152..1484973 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| K2215_RS06980 (K2215_07000) | - | 1485224..1486378 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| K2215_RS06985 (K2215_07005) | - | 1486561..1486761 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| K2215_RS06990 (K2215_07010) | - | 1487182..1487610 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| K2215_RS06995 (K2215_07015) | - | 1487753..1488508 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| K2215_RS07000 (K2215_07020) | - | 1488629..1489045 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| K2215_RS07005 (K2215_07025) | - | 1489209..1489715 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K2215_RS07010 (K2215_07030) | - | 1489797..1490117 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| K2215_RS07015 (K2215_07035) | - | 1490286..1490483 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=595191 K2215_RS06850 WP_003428218.1 1454565..1455611(+) (recA) [Clostridioides difficile strain G89]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=595191 K2215_RS06850 WP_003428218.1 1454565..1455611(+) (recA) [Clostridioides difficile strain G89]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.