Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K2218_RS13995 | Genome accession | NZ_CP081019 |
| Coordinates | 3005183..3006229 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CD099 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2957814..3014450 | 3005183..3006229 | within | 0 |
Gene organization within MGE regions
Location: 2957814..3014450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2218_RS13760 (K2218_13740) | - | 2958677..2959663 (-) | 987 | WP_003428154.1 | phage tail protein | - |
| K2218_RS13765 (K2218_13745) | - | 2959664..2960362 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| K2218_RS13770 (K2218_13750) | - | 2960359..2961411 (-) | 1053 | WP_003428158.1 | baseplate J/gp47 family protein | - |
| K2218_RS13775 (K2218_13755) | - | 2961404..2961832 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| K2218_RS13780 (K2218_13760) | - | 2961832..2962158 (-) | 327 | WP_003428163.1 | DUF2577 domain-containing protein | - |
| K2218_RS13785 (K2218_13765) | - | 2962174..2963706 (-) | 1533 | WP_003428166.1 | NlpC/P60 family protein | - |
| K2218_RS13790 (K2218_13770) | - | 2963988..2964404 (-) | 417 | WP_021375053.1 | phage baseplate protein | - |
| K2218_RS13795 (K2218_13775) | - | 2964410..2966809 (-) | 2400 | WP_003428170.1 | hypothetical protein | - |
| K2218_RS13800 (K2218_13780) | - | 2966809..2966976 (-) | 168 | WP_003428173.1 | hypothetical protein | - |
| K2218_RS13805 (K2218_13785) | - | 2967003..2967449 (-) | 447 | WP_003428176.1 | phage tail assembly chaperone | - |
| K2218_RS13810 (K2218_13790) | - | 2967563..2967991 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| K2218_RS13815 (K2218_13795) | - | 2968005..2969069 (-) | 1065 | WP_003428178.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| K2218_RS13820 (K2218_13800) | - | 2969074..2969517 (-) | 444 | WP_003428180.1 | phage tail terminator family protein | - |
| K2218_RS13825 (K2218_13805) | - | 2969766..2970206 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| K2218_RS13830 (K2218_13810) | - | 2970311..2970508 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS13835 (K2218_13815) | - | 2970677..2970997 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| K2218_RS13840 (K2218_13820) | - | 2971079..2971585 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K2218_RS13845 (K2218_13825) | - | 2971749..2972165 (+) | 417 | WP_003428188.1 | hypothetical protein | - |
| K2218_RS13850 (K2218_13830) | - | 2972286..2973041 (+) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| K2218_RS13855 (K2218_13835) | - | 2973184..2973612 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| K2218_RS13860 (K2218_13840) | - | 2974033..2974233 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| K2218_RS13865 (K2218_13845) | - | 2974416..2975570 (-) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| K2218_RS13870 (K2218_13850) | - | 2975821..2976642 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| K2218_RS13875 (K2218_13855) | - | 2976718..2978106 (-) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| K2218_RS13880 (K2218_13860) | - | 2978241..2978999 (-) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| K2218_RS13885 (K2218_13865) | - | 2979001..2979717 (-) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| K2218_RS13890 (K2218_13870) | - | 2979719..2980426 (-) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| K2218_RS13895 (K2218_13875) | - | 2980542..2981078 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| K2218_RS13900 (K2218_13880) | - | 2981180..2982250 (-) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| K2218_RS13905 (K2218_13885) | - | 2982243..2983301 (-) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| K2218_RS13910 (K2218_13890) | - | 2983288..2983620 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| K2218_RS13915 (K2218_13895) | - | 2983819..2984940 (+) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| K2218_RS13920 (K2218_13900) | - | 2985068..2986966 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| K2218_RS13925 (K2218_13905) | - | 2987281..2988057 (+) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| K2218_RS13930 (K2218_13910) | - | 2988149..2988901 (-) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| K2218_RS13935 (K2218_13915) | galT | 2989054..2990004 (-) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| K2218_RS13940 (K2218_13920) | - | 2990389..2991585 (+) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K2218_RS13945 (K2218_13925) | - | 2991676..2993037 (-) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| K2218_RS13950 (K2218_13930) | - | 2993176..2993928 (-) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| K2218_RS13955 (K2218_13935) | - | 2994076..2995653 (-) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| K2218_RS13960 (K2218_13940) | - | 2996057..2996509 (-) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K2218_RS13965 (K2218_13945) | purB | 2996820..2998265 (-) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| K2218_RS13970 (K2218_13950) | - | 2998409..2999317 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| K2218_RS13975 (K2218_13955) | - | 2999574..3000398 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| K2218_RS13980 (K2218_13960) | lepB | 3000438..3000968 (+) | 531 | WP_021387803.1 | signal peptidase I | - |
| K2218_RS13985 (K2218_13965) | - | 3001050..3002831 (-) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| K2218_RS13990 (K2218_13970) | rny | 3003466..3005007 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| K2218_RS13995 (K2218_13975) | recA | 3005183..3006229 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| K2218_RS14000 (K2218_13980) | pgsA | 3006517..3007059 (-) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| K2218_RS14005 (K2218_13985) | rimO | 3007046..3008380 (-) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| K2218_RS14010 (K2218_13990) | mnmH | 3008374..3009432 (-) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| K2218_RS14015 (K2218_13995) | - | 3009435..3011849 (-) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| K2218_RS14020 (K2218_14000) | - | 3011972..3012706 (-) | 735 | WP_003433325.1 | ClpP family protease | - |
| K2218_RS14025 (K2218_14005) | dapG | 3012819..3014042 (-) | 1224 | WP_003428226.1 | aspartate kinase | - |
| K2218_RS14030 (K2218_14010) | - | 3014052..3014297 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=595179 K2218_RS13995 WP_003428218.1 3005183..3006229(-) (recA) [Clostridioides difficile strain CD099]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=595179 K2218_RS13995 WP_003428218.1 3005183..3006229(-) (recA) [Clostridioides difficile strain CD099]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.