Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K2217_RS06975 | Genome accession | NZ_CP081017 |
| Coordinates | 1481336..1482382 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain SH | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1455822..1517598 | 1481336..1482382 | within | 0 |
Gene organization within MGE regions
Location: 1455822..1517598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2217_RS06870 (K2217_06885) | rimP | 1459570..1460031 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| K2217_RS06875 (K2217_06890) | nusA | 1460061..1461215 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| K2217_RS06880 (K2217_06895) | rnpM | 1461222..1461503 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| K2217_RS06885 (K2217_06900) | - | 1461493..1461804 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| K2217_RS06890 (K2217_06905) | infB | 1461826..1463766 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| K2217_RS06895 (K2217_06910) | rbfA | 1463809..1464189 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| K2217_RS06900 (K2217_06915) | - | 1464170..1465153 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| K2217_RS06905 (K2217_06920) | truB | 1465166..1466071 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| K2217_RS06910 (K2217_06925) | - | 1466202..1467131 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K2217_RS06915 (K2217_06930) | rpsO | 1467235..1467492 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| K2217_RS06920 (K2217_06935) | - | 1467732..1468583 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| K2217_RS06925 (K2217_06940) | pnp | 1468708..1470819 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| K2217_RS06930 (K2217_06945) | - | 1471085..1471828 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| K2217_RS06935 (K2217_06950) | - | 1471986..1473233 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| K2217_RS06940 (K2217_06955) | - | 1473268..1473513 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| K2217_RS06945 (K2217_06960) | dapG | 1473523..1474746 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| K2217_RS06950 (K2217_06965) | - | 1474859..1475593 (+) | 735 | WP_003433325.1 | ClpP family protease | - |
| K2217_RS06955 (K2217_06970) | - | 1475716..1478130 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| K2217_RS06960 (K2217_06975) | mnmH | 1478133..1479191 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| K2217_RS06965 (K2217_06980) | rimO | 1479185..1480519 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| K2217_RS06970 (K2217_06985) | pgsA | 1480506..1481048 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| K2217_RS06975 (K2217_06990) | recA | 1481336..1482382 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| K2217_RS06980 (K2217_06995) | rny | 1482558..1484099 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| K2217_RS06985 (K2217_07000) | - | 1484734..1486515 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| K2217_RS06990 (K2217_07005) | lepB | 1486597..1487127 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| K2217_RS06995 (K2217_07010) | - | 1487167..1487991 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| K2217_RS07000 (K2217_07015) | - | 1488248..1489156 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| K2217_RS07005 (K2217_07020) | purB | 1489300..1490745 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| K2217_RS07010 (K2217_07025) | - | 1491056..1491508 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K2217_RS07015 (K2217_07030) | - | 1491912..1493489 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| K2217_RS07020 (K2217_07035) | - | 1493637..1494389 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| K2217_RS07025 (K2217_07040) | - | 1494528..1495889 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| K2217_RS07030 (K2217_07045) | - | 1495980..1497176 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K2217_RS07035 (K2217_07050) | galT | 1497561..1498511 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| K2217_RS07040 (K2217_07055) | - | 1498664..1499416 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| K2217_RS07045 (K2217_07060) | - | 1499508..1500284 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| K2217_RS07050 (K2217_07065) | - | 1500599..1502497 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| K2217_RS07055 (K2217_07070) | - | 1502625..1503746 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| K2217_RS07060 (K2217_07075) | - | 1503945..1504277 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| K2217_RS07065 (K2217_07080) | - | 1504264..1505322 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| K2217_RS07070 (K2217_07085) | - | 1505315..1506385 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| K2217_RS07075 (K2217_07090) | - | 1506487..1507023 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| K2217_RS07080 (K2217_07095) | - | 1507139..1507846 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| K2217_RS07085 (K2217_07100) | - | 1507848..1508564 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| K2217_RS07090 (K2217_07105) | - | 1508566..1509324 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| K2217_RS07095 (K2217_07110) | - | 1509459..1510847 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| K2217_RS07100 (K2217_07115) | - | 1510923..1511744 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| K2217_RS07105 (K2217_07120) | - | 1511995..1513149 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| K2217_RS07110 (K2217_07125) | - | 1513332..1513532 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| K2217_RS07115 (K2217_07130) | - | 1513953..1514381 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| K2217_RS07120 (K2217_07135) | - | 1514524..1515279 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| K2217_RS07125 (K2217_07140) | - | 1515400..1515816 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| K2217_RS07130 (K2217_07145) | - | 1515980..1516486 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K2217_RS07135 (K2217_07150) | - | 1516568..1516888 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| K2217_RS07140 (K2217_07155) | - | 1517057..1517254 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=595159 K2217_RS06975 WP_003428218.1 1481336..1482382(+) (recA) [Clostridioides difficile strain SH]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=595159 K2217_RS06975 WP_003428218.1 1481336..1482382(+) (recA) [Clostridioides difficile strain SH]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.