Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K2O51_RS15135 Genome accession   NZ_CP080767
Coordinates   570043..571104 (+) Length   353 a.a.
NCBI ID   WP_011296716.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565043..576104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS15115 (K2O51_15115) - 565187..566884 (-) 1698 WP_011296712.1 MFS transporter -
  K2O51_RS15120 (K2O51_15120) - 567146..567466 (-) 321 WP_011296713.1 DUF4212 domain-containing protein -
  K2O51_RS15125 (K2O51_15125) - 567463..569016 (-) 1554 WP_140950784.1 sensor histidine kinase -
  K2O51_RS15130 (K2O51_15130) - 569092..569781 (-) 690 WP_011296715.1 response regulator transcription factor -
  K2O51_RS15135 (K2O51_15135) recA 570043..571104 (+) 1062 WP_011296716.1 recombinase RecA Machinery gene
  K2O51_RS15140 (K2O51_15140) recX 571206..571676 (+) 471 WP_011296717.1 recombination regulator RecX -
  K2O51_RS15145 (K2O51_15145) - 571968..572642 (+) 675 WP_220631299.1 DUF2889 domain-containing protein -
  K2O51_RS15150 (K2O51_15150) sucC 572730..573899 (+) 1170 WP_011296719.1 ADP-forming succinate--CoA ligase subunit beta -
  K2O51_RS15155 (K2O51_15155) sucD 573989..574870 (+) 882 WP_011296720.1 succinate--CoA ligase subunit alpha -
  K2O51_RS15160 (K2O51_15160) - 575142..575837 (+) 696 WP_011296721.1 TerC family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37639.14 Da        Isoelectric Point: 4.9488

>NTDB_id=594830 K2O51_RS15135 WP_011296716.1 570043..571104(+) (recA) [Cupriavidus pinatubonensis strain HN-2]
MDDKKAGAGLSAEKQKALAAALSQIEKQFGKGSIMRMGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVDVGELLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREYLRE
NPDIAQEIENKVRAALGVAPMNSVPAAEVVTED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=594830 K2O51_RS15135 WP_011296716.1 570043..571104(+) (recA) [Cupriavidus pinatubonensis strain HN-2]
ATGGATGACAAGAAGGCAGGTGCCGGCCTGAGCGCCGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCGCAGATCGAGAA
GCAGTTTGGCAAGGGCTCGATCATGCGCATGGGCGACGGCGAGGTCGAGAAGGACATCCAGGTGGTCTCCACCGGCTCCC
TCGGCCTTGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTTGCCGAAATGCAGAAGCTTGGCGGCACCTGCGCCTTTATCGATGCCGAGCACGC
GCTCGACGTCAACTACGCCTCCAAGCTTGGCGTGGACGTGGGCGAGCTGCTGATCTCCCAGCCGGACACTGGCGAACAAG
CGCTCGAAATCACCGATGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCCGCGCTGGTGCCG
AAGGCTGAAATCGAAGGCGAAATGGGTGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTT
CGCCTGAAACGACCACGGGCGGCAATGCGCTGAAGTTCTACGCTTCCGTGCGCCTGGACATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTATCGCCGCCGTTCCGCGAGGC
CTTCTTCGACATCCTCTATGGCCAGGGCATCTCGCGCCAGGGCGAGATCATCGACCTCGGCGTGGACGCCAAGATCGTCG
AGAAGTCGGGCGCCTGGTACAGCTACAACGGCGACAAGATCGGGCAGGGCAAGGACAATGCGCGCGAGTACCTGCGCGAA
AATCCCGACATCGCTCAGGAAATCGAGAACAAGGTCCGCGCCGCGCTGGGCGTTGCGCCGATGAACAGTGTTCCGGCGGC
CGAGGTCGTGACGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.402

100

0.864
  recA Pseudomonas stutzeri DSM 10701

73.314

96.601

0.708
  recA Neisseria gonorrhoeae MS11

74.772

93.201

0.697
  recA Neisseria gonorrhoeae MS11

74.772

93.201

0.697
  recA Neisseria gonorrhoeae strain FA1090

74.772

93.201

0.697
  recA Acinetobacter baylyi ADP1

74.613

91.501

0.683
  recA Vibrio cholerae strain A1552

71.726

95.184

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.726

95.184

0.683
  recA Glaesserella parasuis strain SC1401

71.045

94.901

0.674
  recA Acinetobacter baumannii D1279779

72.477

92.635

0.671
  recA Helicobacter pylori 26695

63.188

97.734

0.618
  recA Helicobacter pylori strain NCTC11637

62.899

97.734

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

93.201

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

63.018

95.751

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.048

93.768

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.635

0.595
  recA Lactococcus lactis subsp. cremoris KW2

61.934

93.768

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

92.068

0.575
  recA Streptococcus mitis NCTC 12261

60.961

94.334

0.575
  recA Streptococcus pneumoniae Rx1

60.661

94.334

0.572
  recA Streptococcus pneumoniae D39

60.661

94.334

0.572
  recA Streptococcus pneumoniae R6

60.661

94.334

0.572
  recA Streptococcus pneumoniae TIGR4

60.661

94.334

0.572
  recA Streptococcus mitis SK321

60.661

94.334

0.572
  recA Streptococcus mutans UA159

61.212

93.484

0.572
  recA Streptococcus pyogenes NZ131

60.486

93.201

0.564