Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A9R16_RS05200 Genome accession   NZ_CP080624
Coordinates   1062252..1063295 (+) Length   347 a.a.
NCBI ID   WP_065970280.1    Uniprot ID   A0A1C2G1L2
Organism   Acidiferrobacter thiooxydans strain ZJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1057252..1068295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9R16_RS05170 (A9R16_005195) ribBA 1058286..1059392 (+) 1107 WP_065970295.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  A9R16_RS05175 (A9R16_005200) ribE 1059389..1059868 (+) 480 WP_065970292.1 6,7-dimethyl-8-ribityllumazine synthase -
  A9R16_RS05180 (A9R16_005205) nusB 1059865..1060290 (+) 426 WP_065970290.1 transcription antitermination factor NusB -
  A9R16_RS05185 (A9R16_005210) thiL 1060291..1061262 (+) 972 WP_065970288.1 thiamine-phosphate kinase -
  A9R16_RS05190 (A9R16_005215) - 1061243..1061707 (+) 465 WP_065970286.1 phosphatidylglycerophosphatase A -
  A9R16_RS05195 (A9R16_005220) - 1061683..1062192 (+) 510 WP_065970281.1 CinA family protein -
  A9R16_RS05200 (A9R16_005225) recA 1062252..1063295 (+) 1044 WP_065970280.1 recombinase RecA Machinery gene
  A9R16_RS05205 (A9R16_005230) - 1063292..1063744 (+) 453 WP_065970278.1 regulatory protein RecX -
  A9R16_RS05210 (A9R16_005235) alaS 1063780..1066359 (+) 2580 WP_065970276.1 alanine--tRNA ligase -
  A9R16_RS05215 (A9R16_005240) - 1066434..1067675 (+) 1242 WP_065970274.1 aspartate kinase -
  A9R16_RS05220 (A9R16_005245) csrA 1067807..1068010 (+) 204 WP_065970271.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36682.82 Da        Isoelectric Point: 5.8649

>NTDB_id=594403 A9R16_RS05200 WP_065970280.1 1062252..1063295(+) (recA) [Acidiferrobacter thiooxydans strain ZJ]
MDVNKGKALSAALGQIEKQFGKGSVMRLGDAGEVSAVAAVPTGSLGLDMALGIGGLPRGRVVEIYGPESSGKTTLTLHVV
AQAQKAGGTAAFIDAEHALDPAYAKRLGVNVDDLLVSQPDSGEQALEITDMLVRSGGVDVVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKRGEEVIGS
QTRVKVVKNKIAPPFRQCEFDILYDQGVSKEGELIELGVASNLVEKSGAWYSYGGERIGQGKDNARQYLRDNPTIAADLE
AKLRASFMTKPAGTSGDDLVPDGGDDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=594403 A9R16_RS05200 WP_065970280.1 1062252..1063295(+) (recA) [Acidiferrobacter thiooxydans strain ZJ]
ATGGATGTCAACAAGGGCAAGGCCTTGAGCGCCGCTCTCGGTCAGATCGAAAAGCAGTTCGGGAAGGGGTCGGTCATGCG
GCTCGGCGATGCCGGCGAGGTATCGGCGGTCGCGGCCGTGCCTACCGGATCACTGGGGCTCGATATGGCGCTCGGCATCG
GCGGCCTGCCGCGGGGCCGGGTGGTCGAAATCTACGGCCCGGAGTCGTCGGGCAAGACCACCTTGACCTTGCATGTCGTG
GCGCAGGCCCAAAAGGCCGGGGGTACGGCGGCGTTCATCGATGCCGAGCACGCCCTCGACCCGGCCTATGCCAAGCGTCT
AGGGGTGAATGTCGATGATCTCTTGGTGTCGCAGCCGGATTCGGGCGAGCAGGCGCTCGAGATCACCGATATGCTGGTGC
GCTCCGGCGGAGTGGATGTAGTGGTCGTCGACTCGGTGGCGGCGTTGACGCCCAAGGCCGAGATCGAGGGCGAGATGGGT
GACTCGCATGTCGGGTTGCAGGCGCGACTCATGTCGCAGGCCTTGCGCAAGCTCACGGGTAATATCAAGCGCTCGAACAC
GCTCGTGATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGCAACCCCGAGACCACGACCGGGGGTAACG
CCCTCAAGTTCTATGCCTCGGTCCGTCTGGACATCCGTCGCATCGGCACCATAAAGCGTGGCGAAGAGGTGATAGGTAGC
CAGACGCGCGTCAAGGTCGTGAAGAACAAGATCGCCCCGCCCTTCCGGCAATGCGAGTTCGATATCCTCTACGATCAAGG
CGTGTCGAAGGAGGGTGAACTGATCGAGTTGGGGGTGGCCTCGAATCTGGTGGAGAAGTCCGGGGCCTGGTACTCGTATG
GAGGCGAGCGCATAGGCCAGGGCAAGGACAATGCGCGTCAGTATCTGCGCGACAACCCGACCATTGCCGCGGATCTGGAG
GCGAAGCTCCGGGCATCGTTCATGACCAAACCCGCGGGGACATCGGGCGATGACCTGGTGCCTGATGGCGGGGATGATGT
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2G1L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.174

99.424

0.718
  recA Acinetobacter baylyi ADP1

73.795

95.677

0.706
  recA Acinetobacter baumannii D1279779

69.741

100

0.697
  recA Vibrio cholerae strain A1552

72.948

94.813

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.948

94.813

0.692
  recA Ralstonia pseudosolanacearum GMI1000

75.157

91.643

0.689
  recA Neisseria gonorrhoeae MS11

71.077

93.66

0.666
  recA Neisseria gonorrhoeae MS11

71.077

93.66

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.077

93.66

0.666
  recA Glaesserella parasuis strain SC1401

70.642

94.236

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.854

94.524

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

95.677

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

65.312

92.219

0.602
  recA Helicobacter pylori strain NCTC11637

63.415

94.524

0.599
  recA Helicobacter pylori 26695

63.11

94.524

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

64.062

92.219

0.591
  recA Streptococcus mutans UA159

61.846

93.66

0.579
  recA Streptococcus mitis SK321

61.538

93.66

0.576
  recA Streptococcus mitis NCTC 12261

61.538

93.66

0.576
  recA Streptococcus pneumoniae R6

61.231

93.66

0.573
  recA Streptococcus pneumoniae Rx1

61.231

93.66

0.573
  recA Streptococcus pneumoniae D39

61.231

93.66

0.573
  recA Streptococcus pneumoniae TIGR4

61.231

93.66

0.573
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.66

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.568

93.372

0.556