Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K1Y48_RS10770 Genome accession   NZ_CP080536
Coordinates   2159544..2160581 (+) Length   345 a.a.
NCBI ID   WP_215849613.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain GT2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154544..2165581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1Y48_RS10745 (K1Y48_10775) sfsA 2155330..2156028 (-) 699 WP_215849609.1 DNA/RNA nuclease SfsA -
  K1Y48_RS10750 (K1Y48_10780) gluQRS 2156055..2156930 (-) 876 WP_215849610.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  K1Y48_RS10755 (K1Y48_10785) thiL 2156992..2158014 (+) 1023 WP_215849611.1 thiamine-phosphate kinase -
  K1Y48_RS10760 (K1Y48_10790) - 2158004..2158489 (+) 486 WP_215849612.1 phosphatidylglycerophosphatase A -
  K1Y48_RS10765 (K1Y48_10795) - 2158486..2159343 (+) 858 WP_229066041.1 CinA family protein -
  K1Y48_RS10770 (K1Y48_10800) recA 2159544..2160581 (+) 1038 WP_215849613.1 recombinase RecA Machinery gene
  K1Y48_RS10775 (K1Y48_10805) - 2160582..2161034 (+) 453 WP_215849614.1 regulatory protein RecX -
  K1Y48_RS10780 (K1Y48_10810) alaS 2161103..2163736 (+) 2634 WP_215849615.1 alanine--tRNA ligase -
  K1Y48_RS10785 (K1Y48_10815) - 2163760..2164341 (-) 582 WP_215849616.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37001.16 Da        Isoelectric Point: 5.9349

>NTDB_id=593619 K1Y48_RS10770 WP_215849613.1 2159544..2160581(+) (recA) [Acidithiobacillus ferriphilus strain GT2]
MDEQRSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
ASCQAAGGTAAFIDAEHALDPSYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELTVNIE
QRIRAAAAGHPLAFAEDVVEPAAVG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=593619 K1Y48_RS10770 WP_215849613.1 2159544..2160581(+) (recA) [Acidithiobacillus ferriphilus strain GT2]
ATGGACGAACAACGTAGCAAGGCCCTTTCGGCGGCCCTCTCACAGATTGATAAGCAATTTGGTAAAGGCGCCGTCATGCG
TCTCGGTGATCATAATGCCATCAAGGACATTGAGGTCTACTCCACCGGTTCGCTGGGGTTGGATCTTGCTCTAGGCGTTG
GTGGTTTGCCGCGGGGCCGGGTGGTAGAGATTTACGGACCGGAATCTTCCGGTAAAACGACTCTTACCCTGCACGCCATA
GCCAGTTGTCAGGCTGCCGGAGGCACGGCGGCTTTCATTGATGCCGAACATGCTCTGGACCCCAGTTATGCCCATAAGCT
CGGCGTCGATCTGGAAAATCTCCTGATCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGATATGCTGGTGC
GCTCCGGGGCTGTCGACCTGATTGTTATCGATTCCGTGGCCGCACTGACCCCCAAAGCGGAAATCGAAGGCGACATGGGC
GACTCCCACGTCGGCTTGCAGGCGCGTCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAATATCTCCCGGACCAACAC
CCTGGTTATCTTCATCAACCAGATTCGTATGAAAATCGGGGTGATGTACGGCAGCCCGGAAACCACCACCGGTGGTAACG
CCCTCAAATTCTACGCCTCCGTGCGTCTCGATATCCGCCGCATCGGCGCGATCAAAAAGAGCGACGAAGTGGTAGGCAAC
GATACCCGCGTCAAAGTAGTCAAGAATAAGGTGGCACCGCCTTTCCGCGAAGCCGAATTCGCCATTTACTACGGTGAAGG
CATCTCCCGTCTTTCCGAGTTGGTGGACCTCGGCGTGAAGTTCGACATCGTCGAAAAAAGCGGCGCCTGGTACAGTTATC
AGGGAGAACGCATCGGCCAGGGCAAGGATAACGCCCGCCAGTATCTCAAGGAACATCCGGAGTTGACGGTCAATATCGAG
CAACGGATACGGGCAGCGGCAGCAGGACATCCACTGGCCTTTGCCGAAGACGTGGTAGAGCCCGCAGCGGTCGGGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

74.691

93.913

0.701
  recA Ralstonia pseudosolanacearum GMI1000

73.476

95.072

0.699
  recA Pseudomonas stutzeri DSM 10701

74.154

94.203

0.699
  recA Acinetobacter baumannii D1279779

74.074

93.913

0.696
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.203

0.69
  recA Glaesserella parasuis strain SC1401

71.125

95.362

0.678
  recA Vibrio cholerae strain A1552

70.988

93.913

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.913

0.667
  recA Helicobacter pylori strain NCTC11637

66.172

97.681

0.646
  recA Helicobacter pylori 26695

65.875

97.681

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

95.072

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

94.203

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

92.754

0.614
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64

94.203

0.603
  recA Streptococcus pyogenes NZ131

62.577

94.493

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

93.913

0.586
  recA Streptococcus pneumoniae TIGR4

61.963

94.493

0.586
  recA Streptococcus pneumoniae R6

61.963

94.493

0.586
  recA Streptococcus mutans UA159

61.963

94.493

0.586
  recA Streptococcus pneumoniae Rx1

61.963

94.493

0.586
  recA Streptococcus pneumoniae D39

61.963

94.493

0.586
  recA Streptococcus mitis NCTC 12261

61.846

94.203

0.583
  recA Streptococcus mitis SK321

61.846

94.203

0.583
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.783

0.568