Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K1X80_RS22680 Genome accession   NZ_CP080494
Coordinates   5047363..5048421 (-) Length   352 a.a.
NCBI ID   WP_029295312.1    Uniprot ID   A0A176V7J5
Organism   Pseudomonas sp. So3.2b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5047363..5063600 5047363..5048421 within 0


Gene organization within MGE regions


Location: 5047363..5063600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X80_RS22680 (K1X80_22680) recA 5047363..5048421 (-) 1059 WP_029295312.1 recombinase RecA Machinery gene
  K1X80_RS22685 (K1X80_22685) - 5048505..5049005 (-) 501 WP_032858393.1 CinA family protein -
  K1X80_RS22690 (K1X80_22690) - 5049087..5049590 (-) 504 WP_057958627.1 lysis system i-spanin subunit Rz -
  K1X80_RS22695 (K1X80_22695) - 5049581..5050132 (-) 552 WP_216311861.1 glycoside hydrolase family 19 protein -
  K1X80_RS22700 (K1X80_22700) - 5050150..5051160 (-) 1011 WP_057439356.1 contractile injection system protein, VgrG/Pvc8 family -
  K1X80_RS22705 (K1X80_22705) - 5051170..5051382 (-) 213 WP_057439355.1 tail protein X -
  K1X80_RS22710 (K1X80_22710) - 5051375..5051758 (-) 384 WP_115128871.1 phage tail protein -
  K1X80_RS28325 - 5051758..5053122 (-) 1365 WP_233093245.1 tail tape measure protein -
  K1X80_RS22720 (K1X80_22720) - 5053251..5053817 (-) 567 WP_057958624.1 phage tail assembly protein -
  K1X80_RS22725 (K1X80_22725) - 5054146..5055108 (+) 963 WP_076965387.1 IS110 family transposase -
  K1X80_RS22730 (K1X80_22730) - 5055153..5055659 (-) 507 WP_057439352.1 phage major tail tube protein -
  K1X80_RS22735 (K1X80_22735) - 5055659..5056825 (-) 1167 WP_057439351.1 hypothetical protein -
  K1X80_RS22740 (K1X80_22740) - 5056828..5057031 (-) 204 WP_057444703.1 hypothetical protein -
  K1X80_RS22745 (K1X80_22745) - 5057124..5057393 (-) 270 WP_057439350.1 hypothetical protein -
  K1X80_RS22750 (K1X80_22750) - 5057396..5058241 (-) 846 WP_057958620.1 hypothetical protein -
  K1X80_RS22755 (K1X80_22755) - 5058281..5058811 (-) 531 WP_057958619.1 phage tail protein -
  K1X80_RS22760 (K1X80_22760) - 5058808..5059446 (-) 639 WP_057439349.1 phage tail protein I -
  K1X80_RS22765 (K1X80_22765) - 5059443..5060438 (-) 996 WP_120734079.1 baseplate J/gp47 family protein -
  K1X80_RS22770 (K1X80_22770) - 5060435..5060767 (-) 333 WP_198792079.1 phage baseplate protein -
  K1X80_RS22775 (K1X80_22775) - 5060777..5061388 (-) 612 WP_198792080.1 phage baseplate assembly protein V -
  K1X80_RS22780 (K1X80_22780) - 5061393..5061905 (-) 513 WP_170060129.1 hypothetical protein -
  K1X80_RS22785 (K1X80_22785) - 5061927..5062271 (-) 345 WP_057439345.1 phage holin family protein -
  K1X80_RS22790 (K1X80_22790) - 5062872..5063600 (-) 729 WP_081044189.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.15 Da        Isoelectric Point: 5.5038

>NTDB_id=593255 K1X80_RS22680 WP_029295312.1 5047363..5048421(-) (recA) [Pseudomonas sp. So3.2b]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLQDNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDDMAEADADI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=593255 K1X80_RS22680 WP_029295312.1 5047363..5048421(-) (recA) [Pseudomonas sp. So3.2b]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAGTCTTCTGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAAATGGGCGCCACTTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATATGCTGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATTCGGATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATCCTCTACGGCAAAGGTAT
TTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GTAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGATATCGCGGCGACCCTCGAGAAG
CAGATCCGCGACAAGCTGCTGACCCCGGCGCCAGACGTCAAGGCAGCAGCCAACCGCGAACCTGTTGATGACATGGCAGA
AGCCGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A176V7J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.714

99.432

0.872
  recA Acinetobacter baylyi ADP1

73.926

99.148

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

93.466

0.702
  recA Vibrio cholerae strain A1552

75.076

93.466

0.702
  recA Ralstonia pseudosolanacearum GMI1000

68.571

99.432

0.682
  recA Glaesserella parasuis strain SC1401

70.92

95.739

0.679
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.544

99.716

0.594
  recA Helicobacter pylori 26695

58.974

99.716

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

59.692

92.33

0.551
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Streptococcus pneumoniae Rx1

58.104

92.898

0.54
  recA Streptococcus pneumoniae R6

58.104

92.898

0.54
  recA Streptococcus pneumoniae TIGR4

58.104

92.898

0.54
  recA Streptococcus pneumoniae D39

58.104

92.898

0.54
  recA Streptococcus mitis NCTC 12261

58.333

92.045

0.537
  recA Streptococcus mitis SK321

58.333

92.045

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.193

0.534
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.308

92.33

0.52