Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDH51_RS02065 Genome accession   NZ_CP097001
Coordinates   411094..411582 (-) Length   162 a.a.
NCBI ID   WP_247963661.1    Uniprot ID   -
Organism   Escherichia coli strain NCCP 15734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 406094..416582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH51_RS02045 - 406101..409088 (+) 2988 WP_247963659.1 hypothetical protein -
  LDH51_RS02050 - 409078..409389 (+) 312 WP_001165933.1 hypothetical protein -
  LDH51_RS02055 - 409419..410207 (-) 789 WP_247963660.1 hypothetical protein -
  LDH51_RS02060 - 410214..410891 (-) 678 WP_001354536.1 DUF2829 domain-containing protein -
  LDH51_RS02065 ssb 411094..411582 (-) 489 WP_247963661.1 single-stranded DNA-binding protein Machinery gene
  LDH51_RS02070 - 411751..412308 (+) 558 WP_247963662.1 lysozyme -
  LDH51_RS02075 - 412600..413619 (-) 1020 WP_000132937.1 head processing protein -
  LDH51_RS02080 - 413612..415321 (-) 1710 WP_000774708.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18024.89 Da        Isoelectric Point: 6.2427

>NTDB_id=593255 LDH51_RS02065 WP_247963661.1 411094..411582(-) (ssb) [Escherichia coli strain NCCP 15734]
MAQRGVNKVNLIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGKLAEIASEYLRKGSQVYI
EGKLKTRKWTDDAGVEHYTTEIIVSQGGTMQMIGARRDDSQSSNGWGQSNQPQNHQQYSGGGKPQSSANNEPPMDFEDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=593255 LDH51_RS02065 WP_247963661.1 411094..411582(-) (ssb) [Escherichia coli strain NCCP 15734]
GTGGCACAACGCGGTGTAAACAAAGTCAACCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATACCAAATGG
CGGCGCGGTCGGAAGACTAAGCATCGCAACGAATGAATCATGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAG
AATGGCATAAAGTCGTTTTGTTCGGAAAACTTGCTGAAATTGCGAGTGAATATTTACGAAAAGGTTCTCAGGTCTACATC
GAAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACATTACACGACGGAAATTATCGTCAGCCAGGG
CGGCACCATGCAAATGATCGGCGCTCGCCGCGACGATTCACAGTCCTCAAATGGCTGGGGGCAGTCAAACCAACCTCAAA
ACCACCAGCAATACAGCGGTGGTGGCAAACCTCAGAGCAGCGCCAATAACGAACCTCCAATGGACTTTGAAGACGATATT
CCGTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.742

100

0.623
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.537
  ssb Neisseria meningitidis MC58

39.205

100

0.426
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.426