Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K1X59_RS08955 Genome accession   NZ_CP080491
Coordinates   1813542..1814591 (+) Length   349 a.a.
NCBI ID   WP_183152792.1    Uniprot ID   -
Organism   Microbacterium sp. Se5.02b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808542..1819591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X59_RS08930 (K1X59_08930) - 1808797..1811514 (+) 2718 WP_183152532.1 DNA translocase FtsK -
  K1X59_RS08935 (K1X59_08935) pgsA 1811514..1812092 (+) 579 WP_183152533.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K1X59_RS08940 (K1X59_08940) - 1812089..1812577 (+) 489 WP_183152534.1 CinA family protein -
  K1X59_RS08945 (K1X59_08945) - 1812719..1813027 (+) 309 WP_026049981.1 helix-turn-helix domain-containing protein -
  K1X59_RS08950 (K1X59_08950) - 1813046..1813270 (+) 225 WP_183152535.1 DUF3046 domain-containing protein -
  K1X59_RS08955 (K1X59_08955) recA 1813542..1814591 (+) 1050 WP_183152792.1 recombinase RecA Machinery gene
  K1X59_RS08960 (K1X59_08960) - 1814988..1815461 (+) 474 WP_258567194.1 regulatory protein RecX -
  K1X59_RS08965 (K1X59_08965) miaB 1815508..1817055 (+) 1548 WP_183152793.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  K1X59_RS08970 (K1X59_08970) miaA 1817052..1817987 (+) 936 WP_220174154.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  K1X59_RS08975 (K1X59_08975) - 1818021..1818551 (+) 531 WP_183152537.1 dihydrofolate reductase family protein -
  K1X59_RS08980 (K1X59_08980) dapF 1818574..1819446 (+) 873 WP_220174155.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37129.42 Da        Isoelectric Point: 5.5016

>NTDB_id=593216 K1X59_RS08955 WP_183152792.1 1813542..1814591(+) (recA) [Microbacterium sp. Se5.02b]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGAQVAAPAAADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=593216 K1X59_RS08955 WP_183152792.1 1813542..1814591(+) (recA) [Microbacterium sp. Se5.02b]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCCCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGCGCCCCCGTGGCCGTCATCCCCACCGGCTCCATCGCCCTCGATGTCGCCCTCGGCG
TCGGAGGGCTCCCGCGTGGCCGAATCGTCGAGATCTACGGGCCTGAGTCCTCAGGTAAGACGACCCTGACCCTGCATGCG
ATCGCGAATGCGCAGCGCGCCGGTGGCATCGCAGCCTTCATCGATGCCGAGCACGCGCTCGACCCCGACTACGCGGCGAA
GCTCGGCGTCGACATCGACGCACTTCTCGTGTCGCAGCCCGACACAGGTGAGCAGGCCCTCGAGATCGCCGACATGCTCG
TCCGGTCCGGTGCGATCGACCTCATCGTGATCGACTCCGTCGCGGCGCTCGTGCCGCGAGCCGAGATCGAGGGCGAGATG
GGTGACTCGCACGTCGGTCTGCAGGCCCGACTCATGTCGCAGGCACTGCGAAAGCTGACCGGTGGTCTGAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGTTCTTCGGCTCGCCCGAAACCACCGCGGGTGGCA
AGGCGCTCAAGTTCTACGCTTCCGTCCGCATGGACATCCGTCGTATCGAGACGCTCAAGGATGGAACCGACGCCGTCGGA
AACCGCACCAGGGTGAAGGTCGTCAAGAACAAGATGGCTCCGCCTTTCAAGCAGGCCGAGTTCGACATCCTCTACGGGGT
CGGAATCTCGCGCGAGGGCAGCCTGATCGACTTCGGTGTCGAACACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCT
ACGACGGCGATCAGCTGGGTCAGGGCAAGGAGAACGCACGCACGTTCCTGCTCAACAACCCAGACATCGCACTGGCTATC
GAAACGCAGATCAAGCAGAAGCTCGGCATCGGTGCCCAGGTCGCGGCGCCCGCGGCCGCCGACGAGCTCGCAGAGCGTCG
TCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.689

97.708

0.642
  recA Acinetobacter baylyi ADP1

65.294

97.421

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.073

93.983

0.63
  recA Neisseria gonorrhoeae MS11

63.372

98.567

0.625
  recA Neisseria gonorrhoeae MS11

63.372

98.567

0.625
  recA Neisseria gonorrhoeae strain FA1090

63.372

98.567

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

93.41

0.619
  recA Acinetobacter baumannii D1279779

66.563

92.55

0.616
  recA Vibrio cholerae strain A1552

66.254

92.55

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.55

0.613
  recA Streptococcus mitis NCTC 12261

60.116

99.14

0.596
  recA Streptococcus mitis SK321

60.116

99.14

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.538

94.842

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

93.123

0.587
  recA Glaesserella parasuis strain SC1401

62.769

93.123

0.585
  recA Helicobacter pylori strain NCTC11637

60.299

95.989

0.579
  recA Helicobacter pylori 26695

60.299

95.989

0.579
  recA Streptococcus pneumoniae D39

61.212

94.556

0.579
  recA Streptococcus pneumoniae R6

61.212

94.556

0.579
  recA Streptococcus pneumoniae TIGR4

61.212

94.556

0.579
  recA Streptococcus pneumoniae Rx1

61.212

94.556

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.269

0.573
  recA Streptococcus mutans UA159

60.486

94.269

0.57
  recA Lactococcus lactis subsp. cremoris KW2

60

94.556

0.567
  recA Streptococcus pyogenes NZ131

60.061

93.983

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.691

0.547