Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K0U91_RS09305 Genome accession   NZ_CP080443
Coordinates   1993715..1994722 (-) Length   335 a.a.
NCBI ID   WP_219970435.1    Uniprot ID   -
Organism   Chryseobacterium sp. LJ668     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988715..1999722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0U91_RS09285 (K0U91_09285) - 1989085..1989753 (+) 669 WP_220180571.1 hypothetical protein -
  K0U91_RS09290 (K0U91_09290) - 1989780..1990751 (+) 972 WP_220180570.1 deoxyhypusine synthase family protein -
  K0U91_RS09295 (K0U91_09295) - 1991173..1991469 (+) 297 WP_219970433.1 MGMT family protein -
  K0U91_RS09300 (K0U91_09300) htpG 1991573..1993468 (-) 1896 WP_220180569.1 molecular chaperone HtpG -
  K0U91_RS09305 (K0U91_09305) recA 1993715..1994722 (-) 1008 WP_219970435.1 recombinase RecA Machinery gene
  K0U91_RS09310 (K0U91_09310) - 1994850..1995158 (-) 309 WP_220180568.1 hypothetical protein -
  K0U91_RS09315 (K0U91_09315) - 1995133..1996329 (-) 1197 WP_220180567.1 oxygenase MpaB family protein -
  K0U91_RS09320 (K0U91_09320) - 1996443..1996907 (-) 465 WP_220180566.1 hypothetical protein -
  K0U91_RS09325 (K0U91_09325) sucC 1996986..1998176 (-) 1191 WP_219970438.1 ADP-forming succinate--CoA ligase subunit beta -
  K0U91_RS09330 (K0U91_09330) - 1998336..1998722 (-) 387 WP_220180565.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 35795.15 Da        Isoelectric Point: 5.8887

>NTDB_id=592908 K0U91_RS09305 WP_219970435.1 1993715..1994722(-) (recA) [Chryseobacterium sp. LJ668]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDSAIDTTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
VGSRVKVKIVKNKVAPPFKMAEFDIMYGEGVSKTGEILDAAVDMGIVKKSGSWFSYGDTKLGQGRDAVRDVLKDNPELAE
ELEGKVKEEIINNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=592908 K0U91_RS09305 WP_219970435.1 1993715..1994722(-) (recA) [Chryseobacterium sp. LJ668]
ATGAGTAATATAGACGATAAGAAAAAAGCACTGGCATTGGTGCTTGACAAGCTAGATAAAACATACGGAAAAGGAACAGT
AATGACGTTGGGAGACAGTGCGATCGACACCACCATCGAAGTGATTCCTTCCGGATCATTAGGATTAGACATCGCTTTAG
GCGTTGGCGGATATCCAAGGGGAAGAATTATTGAGATCTACGGACCAGAATCTTCCGGTAAAACAACATTAACTTTACAT
GCAATCGCGGAAGCACAAAAAGCAGGAGGAATTGCTGCATTTATTGATGCTGAGCACGCTTTTGACAGAGGTTACGCAGG
GAAATTAGGAATCGATCTAGAAAACTTGATTATTTCTCAGCCCGATAACGGTGAACAGGCTTTGGAAATAGCCGATAACC
TGATCCGTTCTGGTGCAATTGACATTGTGGTGATTGACTCAGTGGCAGCATTGACACCAAAGGCAGAGATTGAAGGTGAA
ATGGGAGATTCTAAAATGGGTCTGCACGCAAGATTGATGTCTCAGGCTTTAAGAAAATTAACGGCAACCATTTCAAGAAC
AAAATGTACCGTGATTTTCATCAACCAGTTGAGAGAAAAAATCGGGGTGATGTTCGGAAATCCAGAAACCACTACCGGTG
GTAATGCATTGAAGTTTTACGCTTCTGTGAGAGTGGATATCAGAAAAGCAAGTGCACCGATCAAAAACGGTGACGAAGCT
GTTGGTAGCCGTGTGAAAGTAAAAATTGTGAAAAACAAGGTAGCTCCGCCTTTCAAAATGGCAGAATTTGACATTATGTA
TGGTGAAGGTGTTTCTAAAACAGGTGAAATATTGGATGCTGCCGTTGATATGGGCATTGTGAAGAAAAGCGGTTCTTGGT
TCAGCTACGGCGATACAAAATTAGGACAAGGCCGTGATGCGGTAAGAGATGTTTTAAAAGACAATCCTGAATTGGCTGAA
GAACTTGAAGGAAAAGTAAAAGAAGAAATCATCAATAACAAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.697

98.507

0.785
  recA Acinetobacter baumannii D1279779

63.609

97.612

0.621
  recA Acinetobacter baylyi ADP1

63.303

97.612

0.618
  recA Glaesserella parasuis strain SC1401

62.918

98.209

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.134

93.433

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.577

95.224

0.615
  recA Helicobacter pylori 26695

61.446

99.104

0.609
  recA Helicobacter pylori strain NCTC11637

61.446

99.104

0.609
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.418

0.609
  recA Neisseria gonorrhoeae MS11

63.158

96.418

0.609
  recA Neisseria gonorrhoeae MS11

63.158

96.418

0.609
  recA Streptococcus mitis NCTC 12261

59.531

100

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

61.35

97.313

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.486

98.209

0.594
  recA Vibrio cholerae strain A1552

60.486

98.209

0.594
  recA Streptococcus mitis SK321

60.923

97.015

0.591
  recA Pseudomonas stutzeri DSM 10701

60.55

97.612

0.591
  recA Streptococcus pneumoniae D39

60.308

97.015

0.585
  recA Streptococcus pneumoniae TIGR4

60.308

97.015

0.585
  recA Streptococcus pneumoniae R6

60.308

97.015

0.585
  recA Streptococcus pneumoniae Rx1

60.308

97.015

0.585
  recA Streptococcus pyogenes NZ131

60.123

97.313

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.313

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.418

0.579
  recA Streptococcus mutans UA159

59.327

97.612

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

97.313

0.567