Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K0I63_RS06165 Genome accession   NZ_CP080420
Coordinates   1393085..1394146 (+) Length   353 a.a.
NCBI ID   WP_011865017.1    Uniprot ID   A3QC87
Organism   Shewanella rhizosphaerae strain FJAT-53764     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388085..1399146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I63_RS06155 (K0I63_06155) rpoS 1388953..1389927 (+) 975 WP_011865015.1 RNA polymerase sigma factor RpoS -
  K0I63_RS06160 (K0I63_06160) mutS 1390187..1392754 (-) 2568 WP_220082877.1 DNA mismatch repair protein MutS -
  K0I63_RS06165 (K0I63_06165) recA 1393085..1394146 (+) 1062 WP_011865017.1 recombinase RecA Machinery gene
  K0I63_RS06170 (K0I63_06170) recX 1394242..1394694 (+) 453 WP_220082878.1 recombination regulator RecX -
  K0I63_RS06175 (K0I63_06175) alaS 1394938..1397562 (+) 2625 WP_220082879.1 alanine--tRNA ligase -
  K0I63_RS06180 (K0I63_06180) csrA 1397869..1398066 (+) 198 WP_011865020.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37699.21 Da        Isoelectric Point: 4.9477

>NTDB_id=592805 K0I63_RS06165 WP_011865017.1 1393085..1394146(+) (recA) [Shewanella rhizosphaerae strain FJAT-53764]
MKIDANKEKALSAVLGQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIG
NETRVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVMHKLIEKSGAWYSYKGDKIGQGRANAGKYLVENPEIGAEI
DQALRAMLLGGGQAVAQSATGDENVDLETGEVF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=592805 K0I63_RS06165 WP_011865017.1 1393085..1394146(+) (recA) [Shewanella rhizosphaerae strain FJAT-53764]
ATGAAGATTGATGCGAATAAAGAGAAAGCCCTGAGCGCGGTCCTTGGCCAGATTGAGAAGCAGTTTGGTAAAGGCTCTAT
CATGAAGCTAGGTGAAAACCGCTCTATGGATGTTGAGACTATCTCAACGGGTTCTCTGTCGCTTGACGTTGCATTGGGTG
CAGGCGGTCTGCCACTGGGGCGTATCGTTGAGATCTATGGCCCTGAATCTTCGGGTAAGACCACTCTGACACTGGAAGTG
ATTGCTGCTGCCCAGCGTGAAGGTAAGGTTTGTGCATTCATCGACGCCGAGCACGCGCTGGATCCTATCTATGCACAAAA
ACTCGGTGTGGATATCGATAACCTGCTGTGTTCTCAGCCAGATACCGGTGAGCAGGCGCTTGAGATCTGTGACGCTCTGA
CTCGCTCTGGTGCCGTCGACGTGATCATCGTCGACTCGGTTGCCGCCCTGACGCCTAAGGCGGAAATTGAGGGTGAGATC
GGTGATTCTCACATGGGTCTTGCGGCGCGTATGATGAGTCAGGCGATGCGTAAGCTAGCGGGTAACCTGAAGCAATCTAA
CACCTTGCTGATCTTCATCAACCAGATCCGTATGAAGATAGGCGTGATGTTCGGTAACCCTGAGACCACTACCGGTGGTA
ACGCGCTTAAGTTCTACGCCTCTGTTCGTCTGGATATTCGTCGCACCGGCGCCATCAAGGACCGTGAAGAGGTCATTGGT
AACGAGACTCGCGTTAAGGTGGTGAAGAACAAGATTGCCGCGCCATTCAAACAGGCAGAGTTCCAGATCCTTTATGGTGA
AGGTATTAACCGTACCGGTGAGTTGGTAGACCTTGGCGTGATGCACAAGCTGATTGAAAAGTCAGGCGCCTGGTATAGCT
ACAAGGGTGACAAGATTGGCCAGGGCCGTGCCAATGCCGGTAAATACCTGGTAGAGAACCCAGAGATTGGCGCCGAAATC
GACCAGGCGTTACGCGCCATGTTGCTGGGCGGTGGTCAAGCGGTGGCTCAGTCGGCCACAGGCGATGAGAACGTCGACCT
GGAAACCGGTGAAGTATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3QC87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.827

98.3

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.827

98.3

0.785
  recA Pseudomonas stutzeri DSM 10701

75.229

92.635

0.697
  recA Acinetobacter baylyi ADP1

69.501

96.601

0.671
  recA Glaesserella parasuis strain SC1401

69.231

95.751

0.663
  recA Acinetobacter baumannii D1279779

67.826

97.734

0.663
  recA Neisseria gonorrhoeae MS11

69.969

91.501

0.64
  recA Neisseria gonorrhoeae MS11

69.969

91.501

0.64
  recA Neisseria gonorrhoeae strain FA1090

69.969

91.501

0.64
  recA Ralstonia pseudosolanacearum GMI1000

69.775

88.102

0.615
  recA Streptococcus mitis SK321

59.229

100

0.609
  recA Streptococcus pneumoniae Rx1

61.047

97.45

0.595
  recA Streptococcus pneumoniae D39

61.047

97.45

0.595
  recA Streptococcus pneumoniae R6

61.047

97.45

0.595
  recA Streptococcus pneumoniae TIGR4

61.047

97.45

0.595
  recA Streptococcus pyogenes NZ131

58.056

100

0.592
  recA Streptococcus mitis NCTC 12261

61.111

96.884

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

91.785

0.578
  recA Streptococcus mutans UA159

61.92

91.501

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Helicobacter pylori strain NCTC11637

62.305

90.935

0.567
  recA Helicobacter pylori 26695

61.994

90.935

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

93.201

0.564
  recA Lactococcus lactis subsp. cremoris KW2

60.182

93.201

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

60.938

90.652

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

92.351

0.538