Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K0H79_RS05305 Genome accession   NZ_CP080415
Coordinates   1214671..1215738 (+) Length   355 a.a.
NCBI ID   WP_011759162.1    Uniprot ID   A1S4E7
Organism   Shewanella sp. FJAT-52076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209671..1220738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H79_RS05290 (K0H79_05290) - 1209703..1210593 (+) 891 WP_220077560.1 peptidoglycan DD-metalloendopeptidase family protein -
  K0H79_RS05295 (K0H79_05295) rpoS 1210677..1211660 (+) 984 WP_220067096.1 RNA polymerase sigma factor RpoS -
  K0H79_RS05300 (K0H79_05300) mutS 1211820..1214384 (-) 2565 WP_220077561.1 DNA mismatch repair protein MutS -
  K0H79_RS05305 (K0H79_05305) recA 1214671..1215738 (+) 1068 WP_011759162.1 recombinase RecA Machinery gene
  K0H79_RS05310 (K0H79_05310) - 1215750..1216187 (+) 438 WP_220077562.1 regulatory protein RecX -
  K0H79_RS05315 (K0H79_05315) alaS 1216403..1219033 (+) 2631 WP_220077563.1 alanine--tRNA ligase -
  K0H79_RS05320 (K0H79_05320) - 1219067..1220278 (+) 1212 WP_220077564.1 aspartate kinase -
  K0H79_RS05325 (K0H79_05325) csrA 1220392..1220586 (+) 195 WP_011759166.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38090.48 Da        Isoelectric Point: 4.8219

>NTDB_id=592687 K0H79_RS05305 WP_011759162.1 1214671..1215738(+) (recA) [Shewanella sp. FJAT-52076]
MKIDPNKEKALAAVLGQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALVPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKIAAPFRQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQGRANATKFLAENTEIAAEI
EKTLREMLLSHSSSSGSADEVEGDENIDFETGEVF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=592687 K0H79_RS05305 WP_011759162.1 1214671..1215738(+) (recA) [Shewanella sp. FJAT-52076]
ATGAAAATCGATCCAAATAAAGAGAAAGCACTTGCCGCCGTTCTTGGCCAAATTGAAAAACAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCCATGGACGTGGAAACCATCTCCACCGGCTCGCTGTCTCTGGACGTGGCTCTTGGTG
CAGGCGGTCTGCCAATGGGCCGTATCGTAGAAATCTATGGTCCTGAATCATCAGGTAAAACGACTCTGACCCTCGAAGTG
ATTGCTGCGGCTCAGCGTGAAGGCAAAGTGTGCGCCTTTATCGATGCCGAACACGCCCTCGACCCTGTATATGCCCGTAA
GCTGGGTGTAGATATTGATAACCTGCTGTGCTCTCAGCCAGACACCGGTGAACAGGCGCTGGAAATCTGTGATGCTCTGA
CCCGCAGTGGCGCCGTTGACGTAATCATTGTGGACTCGGTAGCGGCGCTGGTTCCCAAGGCCGAAATCGAAGGTGAAATC
GGTGACTCTCACGTAGGTCTTGCGGCCCGAATGATGAGCCAGGCCATGCGTAAGCTTGCTGGTAACCTCAAGCAGTCCAA
TACTTTGCTGATTTTCATCAACCAAATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCTGAAACCACCACAGGTGGTA
ACGCTCTGAAATTCTACGCATCCGTGCGTTTGGATATCCGCCGCACCGGCGCCATCAAAGAAGGCGACGAAGTGGTGGGT
AACGAAACCCGCGTGAAAGTGGTTAAAAACAAGATTGCCGCGCCTTTCCGCCAGGCCGATTTCCAAATCCTCTATGGTCA
GGGCATTAACCGTACCGGCGAGTTGGTAGACCTGGGTGTACTGCACAAGCTGATTGAAAAGTCCGGTGCATGGTACAGCT
ACAAGGGCGACAAGATCGGTCAGGGCCGCGCCAACGCCACCAAGTTCCTGGCTGAAAATACTGAAATTGCAGCCGAAATT
GAAAAAACACTGCGTGAAATGCTGCTGTCACACAGCTCATCTTCCGGTAGCGCCGATGAAGTAGAAGGCGATGAAAACAT
CGACTTCGAAACTGGAGAAGTGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1S4E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.214

97.465

0.792
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.214

97.465

0.792
  recA Pseudomonas stutzeri DSM 10701

75.075

93.803

0.704
  recA Glaesserella parasuis strain SC1401

68

98.592

0.67
  recA Acinetobacter baylyi ADP1

68.786

97.465

0.67
  recA Acinetobacter baumannii D1279779

68.012

97.746

0.665
  recA Ralstonia pseudosolanacearum GMI1000

70.427

92.394

0.651
  recA Neisseria gonorrhoeae MS11

67.742

96.056

0.651
  recA Neisseria gonorrhoeae MS11

67.742

96.056

0.651
  recA Neisseria gonorrhoeae strain FA1090

67.742

96.056

0.651
  recA Streptococcus pneumoniae D39

58.449

100

0.594
  recA Streptococcus pneumoniae TIGR4

58.449

100

0.594
  recA Streptococcus pneumoniae R6

58.449

100

0.594
  recA Streptococcus pneumoniae Rx1

58.449

100

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

96.901

0.589
  recA Streptococcus mutans UA159

58.31

100

0.583
  recA Streptococcus mitis SK321

62.195

92.394

0.575
  recA Streptococcus mitis NCTC 12261

62.195

92.394

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.423

0.575
  recA Helicobacter pylori strain NCTC11637

58.944

96.056

0.566
  recA Helicobacter pylori 26695

58.651

96.056

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

93.803

0.561
  recA Streptococcus pyogenes NZ131

60.366

92.394

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

61.129

89.859

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.451

92.394

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.683

88.732

0.53