Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KY498_RS00160 Genome accession   NZ_CP080381
Coordinates   30801..31856 (+) Length   351 a.a.
NCBI ID   WP_191008780.1    Uniprot ID   -
Organism   Microbacterium sp. PAMC21962     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25801..36856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY498_RS00135 (KY498_00135) - 25932..28619 (+) 2688 WP_191008782.1 DNA translocase FtsK -
  KY498_RS00140 (KY498_00140) pgsA 28658..29248 (+) 591 WP_191008781.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KY498_RS00145 (KY498_00145) - 29245..29802 (+) 558 WP_101306573.1 CinA family protein -
  KY498_RS00150 (KY498_00150) - 29985..30305 (+) 321 WP_060959482.1 helix-turn-helix domain-containing protein -
  KY498_RS00155 (KY498_00155) - 30307..30531 (+) 225 WP_060959483.1 DUF3046 domain-containing protein -
  KY498_RS00160 (KY498_00160) recA 30801..31856 (+) 1056 WP_191008780.1 recombinase RecA Machinery gene
  KY498_RS00165 (KY498_00165) - 32000..32599 (+) 600 WP_223848948.1 regulatory protein RecX -
  KY498_RS00170 (KY498_00170) miaB 32674..34224 (+) 1551 WP_191008778.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KY498_RS00175 (KY498_00175) miaA 34221..35135 (+) 915 WP_191008777.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  KY498_RS00180 (KY498_00180) - 35132..35557 (+) 426 WP_191008776.1 GNAT family acetyltransferase -
  KY498_RS00185 (KY498_00185) dapF 35614..36477 (+) 864 WP_191008775.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37549.92 Da        Isoelectric Point: 5.8212

>NTDB_id=592449 KY498_RS00160 WP_191008780.1 30801..31856(+) (recA) [Microbacterium sp. PAMC21962]
MPSPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHALVKKSGAWYTYDGEQLGQGKENARNFLLKNPDIAAEI
ETKIKQKLGIGQPRGAAETAPADDLAARRPA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=592449 KY498_RS00160 WP_191008780.1 30801..31856(+) (recA) [Microbacterium sp. PAMC21962]
ATGCCCTCACCCGCCGACCGCGAGAAGGCCCTCGAATCGGCCCTCGCCCAGATCGACCGGCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGAGCGCGCCCCCGTCGAGGTCATCCCGACCGGATCCATCGCGCTGGACGTCGCCCTCGGCG
TCGGGGGTCTGCCGCGCGGCCGCATCATCGAGATCTACGGTCCCGAGTCGTCGGGTAAGACGACCCTGACGCTGCACGCG
ATCGCCAACGTGCAGCGCGCGGGCGGCATCGCCGCTTTCATCGACGCGGAGCACGCGCTCGACCCCGACTACGCCCAGAA
GCTGGGCGTCGACATCGACCAGCTCCTCGTCTCGCAGCCCGACACGGGGGAGCAGGCCCTGGAGATCGCCGACATGCTGG
TGCGCTCGGGCGCGATCGACCTCGTCGTGATCGACTCGGTCGCCGCGCTGGTGCCCAAGGCCGAGATCGAGGGCGAGATG
GGAGACTCGCACGTGGGTCTGCAGGCGCGACTGATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGGCTCAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGTA
AAGCGTTGAAGTTCTACGCGTCGGTGCGCCTCGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCGAGGCGGTCGGA
AACCGTACGCGCGTGAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTGTACGGCAT
CGGCATCTCGCGCGAGGGCTCCCTCATCGACTTCGGTGTGGAGCACGCGCTGGTCAAGAAGTCCGGTGCCTGGTACACCT
ACGACGGCGAGCAGCTGGGGCAGGGCAAGGAGAACGCGCGCAACTTCCTGCTGAAGAACCCCGACATCGCCGCCGAGATC
GAGACCAAGATCAAGCAGAAGCTCGGCATCGGACAGCCGCGCGGCGCGGCCGAGACGGCGCCCGCCGACGATCTGGCTGC
GCGCCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.862

97.151

0.65
  recA Ralstonia pseudosolanacearum GMI1000

69.35

92.023

0.638
  recA Acinetobacter baumannii D1279779

66.967

94.872

0.635
  recA Neisseria gonorrhoeae MS11

67.791

92.877

0.63
  recA Neisseria gonorrhoeae strain FA1090

67.791

92.877

0.63
  recA Neisseria gonorrhoeae MS11

67.791

92.877

0.63
  recA Acinetobacter baylyi ADP1

68.111

92.023

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

92.877

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.183

92.023

0.618
  recA Vibrio cholerae strain A1552

67.183

92.023

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.417

92.877

0.598
  recA Helicobacter pylori strain NCTC11637

63.03

94.017

0.593
  recA Helicobacter pylori 26695

63.03

94.017

0.593
  recA Streptococcus mitis SK321

61.176

96.866

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.692

92.593

0.59
  recA Glaesserella parasuis strain SC1401

63.692

92.593

0.59
  recA Lactococcus lactis subsp. cremoris KW2

62.424

94.017

0.587
  recA Streptococcus mitis NCTC 12261

61.934

94.302

0.584
  recA Streptococcus pneumoniae D39

62.121

94.017

0.584
  recA Streptococcus pneumoniae Rx1

62.121

94.017

0.584
  recA Streptococcus pneumoniae R6

62.121

94.017

0.584
  recA Streptococcus pneumoniae TIGR4

62.121

94.017

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

93.732

0.578
  recA Streptococcus pyogenes NZ131

61.398

93.732

0.575
  recA Streptococcus mutans UA159

60.79

93.732

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

91.168

0.541