Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KY497_RS10570 Genome accession   NZ_CP080380
Coordinates   2119727..2120773 (+) Length   348 a.a.
NCBI ID   WP_055868716.1    Uniprot ID   A0A4Y4BCG1
Organism   Microbacterium sp. PAMC22086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2114727..2125773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY497_RS10545 (KY497_10545) - 2114972..2117707 (+) 2736 WP_219869007.1 DNA translocase FtsK -
  KY497_RS10550 (KY497_10550) pgsA 2117707..2118282 (+) 576 WP_017830903.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KY497_RS10555 (KY497_10555) - 2118279..2118764 (+) 486 WP_141388011.1 CinA family protein -
  KY497_RS10560 (KY497_10560) - 2118906..2119214 (+) 309 WP_017830901.1 helix-turn-helix domain-containing protein -
  KY497_RS10565 (KY497_10565) - 2119233..2119457 (+) 225 WP_055868718.1 DUF3046 domain-containing protein -
  KY497_RS10570 (KY497_10570) recA 2119727..2120773 (+) 1047 WP_055868716.1 recombinase RecA Machinery gene
  KY497_RS16730 - 2121169..2121642 (+) 474 WP_229779048.1 regulatory protein RecX -
  KY497_RS10580 (KY497_10580) miaB 2121691..2123238 (+) 1548 WP_219869008.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KY497_RS10585 (KY497_10585) miaA 2123235..2124146 (+) 912 WP_219869009.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  KY497_RS10590 (KY497_10590) - 2124184..2124714 (+) 531 WP_219869010.1 dihydrofolate reductase family protein -
  KY497_RS10595 (KY497_10595) dapF 2124745..2125617 (+) 873 WP_055868710.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36987.27 Da        Isoelectric Point: 5.5016

>NTDB_id=592446 KY497_RS10570 WP_055868716.1 2119727..2120773(+) (recA) [Microbacterium sp. PAMC22086]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGGAAVPAAADELAERRPA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=592446 KY497_RS10570 WP_055868716.1 2119727..2120773(+) (recA) [Microbacterium sp. PAMC22086]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCCCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGTGCCCCCGTGGCTGTCATCCCCACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TCGGAGGTCTCCCGCGTGGTCGAATCGTCGAGATCTACGGACCGGAGTCCTCGGGTAAGACGACTCTCACCCTGCACGCG
ATCGCGAACGCTCAGCGCGCCGGCGGCATCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGGATTACGCCGCGAA
GCTCGGTGTCGACATCGACGCACTTCTGGTCTCCCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCGGGGGCCATCGACCTCATCGTCATCGACTCCGTGGCCGCGCTCGTCCCTCGCGCCGAGATCGAGGGTGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCGCGACTCATGTCACAGGCGCTGCGTAAGCTCACGGGTGGTCTGAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTTCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACGTTGAAGGATGGCACCGACGCCGTCGGA
AACCGCACCAGGGTGAAGGTGGTGAAGAACAAGATGGCACCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAAGGCAGCCTGATCGACTTCGGTGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCT
ACGACGGAGATCAGCTGGGCCAGGGCAAGGAGAACGCGCGAACGTTCCTGCTCAACAACCCCGACATCGCGCTGGCCATC
GAGACGCAGATCAAGCAGAAGCTCGGCATCGGCGGCGCGGCTGTGCCGGCGGCTGCAGACGAGCTCGCCGAGCGTCGTCC
GGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y4BCG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.272

97.126

0.644
  recA Acinetobacter baylyi ADP1

65.192

97.414

0.635
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.966

0.626
  recA Neisseria gonorrhoeae MS11

63.557

98.563

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.557

98.563

0.626
  recA Neisseria gonorrhoeae MS11

63.557

98.563

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.559

95.115

0.624
  recA Acinetobacter baumannii D1279779

66.563

92.816

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.816

0.615
  recA Vibrio cholerae strain A1552

66.254

92.816

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.315

96.839

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

61.357

97.414

0.598
  recA Streptococcus mitis SK321

59.827

99.425

0.595
  recA Helicobacter pylori 26695

59.42

99.138

0.589
  recA Helicobacter pylori strain NCTC11637

59.42

99.138

0.589
  recA Glaesserella parasuis strain SC1401

62.769

93.391

0.586
  recA Streptococcus mitis NCTC 12261

61.515

94.828

0.583
  recA Streptococcus pneumoniae TIGR4

61.212

94.828

0.58
  recA Streptococcus pneumoniae Rx1

61.212

94.828

0.58
  recA Streptococcus pneumoniae D39

61.212

94.828

0.58
  recA Streptococcus pneumoniae R6

61.212

94.828

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.54

0.575
  recA Streptococcus mutans UA159

60.486

94.54

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60

94.828

0.569
  recA Streptococcus pyogenes NZ131

60.061

94.253

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.954

0.549