Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KY494_RS20680 Genome accession   NZ_CP080377
Coordinates   4615655..4616764 (+) Length   369 a.a.
NCBI ID   WP_219132566.1    Uniprot ID   -
Organism   Janthinobacterium sp. PAMC25594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4610655..4621764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS20660 (KY494_20660) - 4610790..4612838 (-) 2049 WP_219888066.1 sodium:solute symporter family protein -
  KY494_RS20665 (KY494_20665) - 4612835..4613149 (-) 315 WP_219888067.1 DUF4212 domain-containing protein -
  KY494_RS20670 (KY494_20670) - 4613142..4614674 (-) 1533 WP_258194351.1 sensor histidine kinase -
  KY494_RS20675 (KY494_20675) - 4614671..4615405 (-) 735 WP_219132565.1 response regulator transcription factor -
  KY494_RS20680 (KY494_20680) recA 4615655..4616764 (+) 1110 WP_219132566.1 recombinase RecA Machinery gene
  KY494_RS20685 (KY494_20685) recX 4616968..4617423 (+) 456 WP_100874617.1 recombination regulator RecX -
  KY494_RS20690 (KY494_20690) - 4617519..4619048 (+) 1530 WP_219888068.1 class I SAM-dependent methyltransferase -
  KY494_RS20695 (KY494_20695) - 4619407..4619898 (+) 492 WP_375143378.1 DUF2889 domain-containing protein -
  KY494_RS20700 (KY494_20700) sucC 4619974..4621143 (+) 1170 WP_096238002.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39269.96 Da        Isoelectric Point: 6.3135

>NTDB_id=592393 KY494_RS20680 WP_219132566.1 4615655..4616764(+) (recA) [Janthinobacterium sp. PAMC25594]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAVIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKADKAADKAAKAEAKPE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=592393 KY494_RS20680 WP_219132566.1 4615655..4616764(+) (recA) [Janthinobacterium sp. PAMC25594]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCGGTGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCTGAATCGTCGGGTAAA
ACCACGCTGACCCTGCAAACCATTGCTGAAATGCAAAAACTGGGCGGCACGTGCGCCTTTATCGATGCCGAGCACGCGCT
CGACGTCGGCTACGCGCAAAAGCTGGGTGTGAACCTGCACGAATTGCTGATCTCGCAACCGGATACGGGCGAGCAGGCGC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTGGTCGTCATCGACTCCGTGGCCGCACTGACGCCTCGC
GCCGAGATCGAAGGCGACATGGGCGATTCCCTGCCAGGCTTGCAAGCGCGCCTGATGTCGCAAGCCCTGCGTAAATTGAC
CGGTTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTC
CGGAAACCACCACCGGCGGCAATGCGCTGAAATTCTACGCTTCCGTGCGTCTGGACATCCGCCGCACCGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTGGACCTGGGCTCGGATGCCAAGATCGTCGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCCCGCGAGATCGAAAACAAGGTCCGCGCTTCGCTGGGCGTGCGTGAACTGCCGCCGCTGGCTGCTGAAAA
GCCGGAAAAAGCCGATAAAGCCGATAAAGCCGCCGACAAGGCTGCCAAGGCGGAAGCCAAGCCAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.057

0.764
  recA Neisseria gonorrhoeae MS11

72.866

88.889

0.648
  recA Neisseria gonorrhoeae MS11

72.866

88.889

0.648
  recA Neisseria gonorrhoeae strain FA1090

72.866

88.889

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.497

93.767

0.642
  recA Vibrio cholerae strain A1552

68.497

93.767

0.642
  recA Glaesserella parasuis strain SC1401

66.667

94.309

0.629
  recA Pseudomonas stutzeri DSM 10701

70.898

87.534

0.621
  recA Acinetobacter baylyi ADP1

70.898

87.534

0.621
  recA Acinetobacter baumannii D1279779

70.588

87.534

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

90.244

0.602
  recA Helicobacter pylori 26695

62.682

92.954

0.583
  recA Helicobacter pylori strain NCTC11637

62.391

92.954

0.58
  recA Streptococcus mutans UA159

60.34

95.664

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.618

0.572
  recA Streptococcus mitis NCTC 12261

59.885

94.58

0.566
  recA Streptococcus pyogenes NZ131

63.222

89.16

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

89.431

0.561
  recA Streptococcus pneumoniae Rx1

62.236

89.702

0.558
  recA Streptococcus pneumoniae TIGR4

62.236

89.702

0.558
  recA Streptococcus pneumoniae D39

62.236

89.702

0.558
  recA Streptococcus pneumoniae R6

62.236

89.702

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

88.618

0.558
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.347

0.558
  recA Streptococcus mitis SK321

61.934

89.702

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.702

0.553