Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H650_RS08795 Genome accession   NC_021500
Coordinates   1870227..1871291 (-) Length   354 a.a.
NCBI ID   WP_020454923.1    Uniprot ID   -
Organism   Enterobacter sp. R4-368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865227..1876291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H650_RS08780 (H650_09625) csrA 1866474..1866659 (-) 186 WP_007370562.1 carbon storage regulator CsrA -
  H650_RS08785 (H650_09630) alaS 1866898..1869528 (-) 2631 WP_020454921.1 alanine--tRNA ligase -
  H650_RS08790 (H650_09635) recX 1869658..1870158 (-) 501 WP_020454922.1 recombination regulator RecX -
  H650_RS08795 (H650_09640) recA 1870227..1871291 (-) 1065 WP_020454923.1 recombinase RecA Machinery gene
  H650_RS08800 (H650_09645) pncC 1871381..1871878 (-) 498 WP_020454924.1 nicotinamide-nucleotide amidase -
  H650_RS08805 (H650_09650) - 1872015..1872893 (-) 879 WP_020454925.1 metal ABC transporter substrate-binding protein -
  H650_RS08810 (H650_09655) - 1872906..1873769 (-) 864 WP_020454926.1 metal ABC transporter permease -
  H650_RS08815 (H650_09660) - 1873766..1874440 (-) 675 WP_020454927.1 ATP-binding cassette domain-containing protein -
  H650_RS08820 (H650_09665) mltB 1874668..1875750 (-) 1083 WP_020454928.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38051.31 Da        Isoelectric Point: 4.6962

>NTDB_id=59222 H650_RS08795 WP_020454923.1 1870227..1871291(-) (recA) [Enterobacter sp. R4-368]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANATTWLKENPAAAKEI
EKKLREILLSNQSSSAEFTADGNDEDVEETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=59222 H650_RS08795 WP_020454923.1 1870227..1871291(-) (recA) [Enterobacter sp. R4-368]
ATGGCTATCGACGAAAACAAACAAAAGGCGCTTGCAGCCGCACTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACAGGTTCGCTCTCGCTGGATATCGCGCTGGGCG
CTGGCGGTTTGCCGATGGGGCGTATCGTCGAAATTTACGGACCTGAATCTTCAGGTAAAACGACGCTGACCTTGCAGGTC
ATTGCCGCAGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGATCCGGTTTACGCTCGCAA
ACTGGGCGTTGATATCGACAACCTGCTCTGCTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTGCTGGTGGTCGACTCCGTTGCAGCGTTGACGCCGAAAGCGGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCTGGTAACCTGAAACAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAATTCTACGCCTCTGTGCGTCTGGATATTCGCCGTATCGGTGCGGTGAAAGAGGGGGATAACGTGGTCGGC
AGCGAAACCCGCGTTAAAGTGGTGAAAAACAAAATCGCTGCGCCGTTTAAGCAGGCTGAATTCCAGATCCTCTATGGCGA
GGGCATCAACTTCTACGGCGAGCTGGTCGATCTTGGCGTGAAAGAGAAGCTGATTGAGAAAGCCGGCGCCTGGTATAGCT
ACAACGGTGACAAAATTGGTCAAGGTAAAGCGAACGCAACAACCTGGCTGAAAGAAAACCCGGCGGCAGCAAAAGAGATC
GAGAAAAAGCTGCGCGAAATTCTGCTCAGCAATCAGAGTTCTTCCGCTGAATTCACTGCCGATGGCAATGACGAAGACGT
TGAAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.791

100

0.808
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.791

100

0.808
  recA Pseudomonas stutzeri DSM 10701

72.046

98.023

0.706
  recA Acinetobacter baylyi ADP1

71.06

98.588

0.701
  recA Glaesserella parasuis strain SC1401

70.655

99.153

0.701
  recA Acinetobacter baumannii D1279779

71.594

97.458

0.698
  recA Neisseria gonorrhoeae strain FA1090

69.444

91.525

0.636
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Helicobacter pylori strain NCTC11637

62.162

94.068

0.585
  recA Streptococcus pneumoniae D39

59.312

98.588

0.585
  recA Streptococcus pneumoniae TIGR4

59.312

98.588

0.585
  recA Streptococcus pneumoniae R6

59.312

98.588

0.585
  recA Streptococcus pneumoniae Rx1

59.312

98.588

0.585
  recA Helicobacter pylori 26695

61.862

94.068

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.678

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

91.525

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.808

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

92.373

0.551

Multiple sequence alignment