Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KZ686_RS15475 Genome accession   NZ_CP080293
Coordinates   3487325..3488377 (-) Length   350 a.a.
NCBI ID   WP_149316810.1    Uniprot ID   -
Organism   Cupriavidus cauae strain PHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3482325..3493377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ686_RS15450 (KZ686_15415) - 3482482..3483177 (-) 696 WP_150083306.1 TerC family protein -
  KZ686_RS15455 (KZ686_15420) sucD 3483485..3484366 (-) 882 WP_006576698.1 succinate--CoA ligase subunit alpha -
  KZ686_RS15460 (KZ686_15425) sucC 3484440..3485606 (-) 1167 WP_149316813.1 ADP-forming succinate--CoA ligase subunit beta -
  KZ686_RS15465 (KZ686_15430) - 3485707..3486387 (-) 681 WP_265632750.1 DUF2889 domain-containing protein -
  KZ686_RS15470 (KZ686_15435) recX 3486710..3487177 (-) 468 WP_226107318.1 recombination regulator RecX -
  KZ686_RS15475 (KZ686_15440) recA 3487325..3488377 (-) 1053 WP_149316810.1 recombinase RecA Machinery gene
  KZ686_RS15480 (KZ686_15445) - 3488814..3489506 (+) 693 WP_149316809.1 response regulator transcription factor -
  KZ686_RS15485 (KZ686_15450) - 3489595..3491169 (+) 1575 WP_265632751.1 sensor histidine kinase -
  KZ686_RS15490 (KZ686_15455) - 3491166..3491534 (+) 369 WP_149316807.1 DUF4212 domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37220.70 Da        Isoelectric Point: 5.0346

>NTDB_id=592016 KZ686_RS15475 WP_149316810.1 3487325..3488377(-) (recA) [Cupriavidus cauae strain PHS1]
MDDGKKAAGVSAEKQKALAAALAQIEKQFGKGSIMRMGDGEVEQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVSVSDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVP
RAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGKDNAREFLRE
NPDIADEIENKVRAALGVVPMNGTPALAAE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=592016 KZ686_RS15475 WP_149316810.1 3487325..3488377(-) (recA) [Cupriavidus cauae strain PHS1]
ATGGATGACGGCAAGAAGGCAGCTGGCGTGAGCGCCGAGAAGCAGAAGGCGCTGGCCGCCGCGCTGGCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGGATGGGCGACGGCGAGGTCGAGCAGGACATCCAGGTGGTGTCGACCGGCTCGC
TGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGGGTCGTCGAGATCTACGGCCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTGGTCGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCGTTCATCGACGCGGAGCATGC
GCTGGACGTCAATTACGCCAGCAAGCTGGGCGTCAGCGTCAGCGATCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGG
CGCTCGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTGATCGACTCGGTGGCGGCGCTGGTGCCC
CGGGCCGAAATCGAAGGCGAGATGGGCGACGCGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAATTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCGGAAACCACGACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTGATCGGCAACGAGACCAAGGTAAAGGTGGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGAGGC
CTTCTTCGACATCCTGTACGGCCAGGGCATCTCGCGCCAGGGCGAAATCATCGACCTCGGCGTGGACGCCAAGATCGTCG
AGAAGTCGGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAATGCGCGCGAATTCCTGCGCGAG
AATCCCGATATCGCCGACGAAATCGAGAACAAGGTCCGCGCCGCCCTCGGCGTGGTGCCGATGAACGGTACGCCGGCGCT
GGCGGCAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

88.857

100

0.889
  recA Pseudomonas stutzeri DSM 10701

74.184

96.286

0.714
  recA Neisseria gonorrhoeae MS11

74.164

94

0.697
  recA Neisseria gonorrhoeae strain FA1090

74.164

94

0.697
  recA Neisseria gonorrhoeae MS11

74.164

94

0.697
  recA Acinetobacter baylyi ADP1

73.065

92.286

0.674
  recA Glaesserella parasuis strain SC1401

69.822

96.571

0.674
  recA Acinetobacter baumannii D1279779

70.909

94.286

0.669
  recA Vibrio cholerae strain A1552

72.136

92.286

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.136

92.286

0.666
  recA Latilactobacillus sakei subsp. sakei 23K

64.412

97.143

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

94

0.614
  recA Helicobacter pylori 26695

62.757

97.429

0.611
  recA Helicobacter pylori strain NCTC11637

62.463

97.429

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.438

94

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

93.429

0.6
  recA Lactococcus lactis subsp. cremoris KW2

60.933

98

0.597
  recA Streptococcus mutans UA159

61.607

96

0.591
  recA Streptococcus mitis NCTC 12261

61.747

94.857

0.586
  recA Streptococcus pneumoniae TIGR4

61.446

94.857

0.583
  recA Streptococcus pneumoniae R6

61.446

94.857

0.583
  recA Streptococcus pneumoniae Rx1

61.446

94.857

0.583
  recA Streptococcus pneumoniae D39

61.446

94.857

0.583
  recA Streptococcus mitis SK321

61.145

94.857

0.58
  recA Streptococcus pyogenes NZ131

61.094

94

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

92.857

0.569