Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KZX46_RS16095 Genome accession   NZ_CP080243
Coordinates   2613431..2614504 (-) Length   357 a.a.
NCBI ID   WP_219774821.1    Uniprot ID   -
Organism   Polymorphobacter sp. PAMC 29334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2608431..2619504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX46_RS16080 (KZX46_16070) - 2608733..2609959 (+) 1227 WP_219774818.1 NADP-dependent isocitrate dehydrogenase -
  KZX46_RS16085 (KZX46_16075) - 2610083..2610706 (+) 624 WP_219774819.1 YoaK family protein -
  KZX46_RS16090 (KZX46_16080) alaS 2610703..2613372 (-) 2670 WP_219774820.1 alanine--tRNA ligase -
  KZX46_RS16095 (KZX46_16085) recA 2613431..2614504 (-) 1074 WP_219774821.1 recombinase RecA Machinery gene
  KZX46_RS16100 (KZX46_16090) - 2614572..2614952 (-) 381 WP_219774822.1 response regulator -
  KZX46_RS16105 (KZX46_16095) - 2614977..2616476 (-) 1500 WP_219774823.1 ATP-binding protein -
  KZX46_RS16110 (KZX46_16100) - 2616526..2617194 (-) 669 WP_219774824.1 sulfite oxidase-like oxidoreductase -
  KZX46_RS16115 (KZX46_16105) smpB 2617197..2617679 (-) 483 WP_216707809.1 SsrA-binding protein SmpB -
  KZX46_RS16120 (KZX46_16110) dapA 2617679..2618551 (-) 873 WP_219774825.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38101.59 Da        Isoelectric Point: 5.3462

>NTDB_id=591601 KZX46_RS16095 WP_219774821.1 2613431..2614504(-) (recA) [Polymorphobacter sp. PAMC 29334]
MAAALKVVGGDMDKAKALEAALAQIDRAFGKGSVMKLGSRATMEIESSPTGSLGLDIALGIGGLPRGRVIEIYGPESSGK
TTLALHAIAEAQKNGGTAAFVDAEHALDPAYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVIDSVAALVPR
AEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCIVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIK
DRDEVVGNTTRVKVVKNKVSPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGAWFSYDSIRIGQGRENSKKFLKEN
PDIRDRIEKAVRDNAAGIGEALMVGLSADDDTGDDEM

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=591601 KZX46_RS16095 WP_219774821.1 2613431..2614504(-) (recA) [Polymorphobacter sp. PAMC 29334]
ATGGCGGCGGCGCTGAAAGTGGTTGGGGGCGACATGGACAAGGCAAAGGCGCTGGAAGCAGCGCTGGCACAGATTGATCG
CGCCTTCGGCAAGGGCTCGGTGATGAAGCTCGGCTCGCGCGCCACGATGGAGATCGAGAGCAGCCCGACGGGTTCGCTCG
GCCTCGATATCGCGCTCGGCATCGGCGGCCTGCCCCGCGGCCGCGTCATCGAGATTTATGGCCCCGAGAGCTCGGGCAAG
ACGACGCTCGCGCTGCACGCGATCGCCGAGGCGCAGAAGAATGGCGGGACCGCGGCCTTCGTCGACGCTGAACACGCGCT
CGATCCGGCCTATGCCAAGAAGCTCGGCGTCAACATCGACGAACTGATCGTGTCGCAGCCCGACACCGGTGAGCAGGCGC
TCGAGATCGTCGATACGCTCGTCCGGTCGAATGCGATCGACGTGCTGGTGATCGATTCGGTCGCCGCCCTCGTTCCCCGC
GCCGAAATCGAAGGCGAGATGGGCGACAGCCATGTCGGTCTCCAGGCGCGATTGATGAGCCAGTCGCTGCGCAAGCTGAC
CGGGTCGATCAGCCGCTCGCGCTGCATCGTCATCTTCATCAACCAGCTGCGGATGAAGATCGGCGTGATGTACGGCAATC
CGGAGACGACGACCGGCGGCAACGCGCTCAAATTCTATGCCAGCGTCCGCCTCGACATCCGCCGCACCGGCCAGATCAAG
GATCGCGACGAAGTCGTCGGCAACACCACGCGGGTGAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGCAGGTCGA
ATTCGACATCATGTATGGCGAGGGCATTTCGAAGATTGGCGAGATCCTCGATCTCGGCGTCAAGGCGGGCGTCGTCGAGA
AGTCGGGGGCGTGGTTCAGCTACGACTCGATCAGGATCGGTCAGGGCCGCGAGAATTCGAAGAAGTTCCTCAAGGAAAAC
CCCGACATTCGCGACCGGATCGAGAAGGCCGTGCGCGACAACGCGGCTGGCATCGGGGAAGCTTTGATGGTTGGCCTGTC
GGCCGACGACGACACGGGTGACGACGAAATGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.807

90.196

0.639
  recA Glaesserella parasuis strain SC1401

66.082

95.798

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.451

96.919

0.625
  recA Neisseria gonorrhoeae strain FA1090

69.47

89.916

0.625
  recA Neisseria gonorrhoeae MS11

69.47

89.916

0.625
  recA Neisseria gonorrhoeae MS11

69.47

89.916

0.625
  recA Vibrio cholerae strain A1552

68.421

90.476

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.421

90.476

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

90.196

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

91.597

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.677

86.835

0.605
  recA Acinetobacter baumannii D1279779

66.563

90.476

0.602
  recA Acinetobacter baylyi ADP1

66.049

90.756

0.599
  recA Helicobacter pylori 26695

62.575

93.557

0.585
  recA Helicobacter pylori strain NCTC11637

62.275

93.557

0.583
  recA Streptococcus pneumoniae Rx1

63.889

90.756

0.58
  recA Streptococcus pneumoniae TIGR4

63.889

90.756

0.58
  recA Streptococcus pneumoniae R6

63.889

90.756

0.58
  recA Streptococcus pneumoniae D39

63.889

90.756

0.58
  recA Streptococcus mitis NCTC 12261

63.272

90.756

0.574
  recA Streptococcus mitis SK321

62.654

90.756

0.569
  recA Streptococcus pyogenes NZ131

62.037

90.756

0.563
  recA Streptococcus mutans UA159

61.728

90.756

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.875

89.636

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

91.036

0.549
  recA Lactococcus lactis subsp. cremoris KW2

60.494

90.756

0.549