Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KYI09_RS05985 Genome accession   NZ_CP079965
Coordinates   1183285..1184346 (-) Length   353 a.a.
NCBI ID   WP_219520697.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa0687     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178285..1189346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI09_RS05965 (KYI09_05970) - 1178412..1180145 (-) 1734 WP_219520691.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  KYI09_RS05970 (KYI09_05975) - 1180250..1181044 (-) 795 WP_219520693.1 TIGR00282 family metallophosphoesterase -
  KYI09_RS05975 (KYI09_05980) - 1181140..1181322 (+) 183 WP_120786912.1 hypothetical protein -
  KYI09_RS05980 (KYI09_05985) rny 1181399..1182958 (-) 1560 WP_219520695.1 ribonuclease Y -
  KYI09_RS05985 (KYI09_05990) recA 1183285..1184346 (-) 1062 WP_219520697.1 recombinase RecA Machinery gene
  KYI09_RS05990 (KYI09_05995) pgsA 1184624..1185205 (-) 582 WP_012656781.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KYI09_RS05995 (KYI09_06000) - 1185222..1186043 (-) 822 WP_012656780.1 helix-turn-helix domain-containing protein -
  KYI09_RS06000 (KYI09_06005) - 1186059..1186850 (-) 792 WP_012656779.1 YmfK family protein -
  KYI09_RS06005 (KYI09_06010) - 1186861..1187568 (-) 708 WP_012656778.1 SDR family NAD(P)-dependent oxidoreductase -
  KYI09_RS06010 (KYI09_06015) yfmH 1187561..1188829 (-) 1269 WP_012656777.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38443.63 Da        Isoelectric Point: 5.1195

>NTDB_id=590545 KYI09_RS05985 WP_219520697.1 1183285..1184346(-) (recA) [Macrococcoides caseolyticum strain 19Msa0687]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPIYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEIRDEIDQK
IRKAMGVGASLEEASAQKEEVPVEDKLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=590545 KYI09_RS05985 WP_219520697.1 1183285..1184346(-) (recA) [Macrococcoides caseolyticum strain 19Msa0687]
ATGAGTGAAAGACAAAAAGCATTAGACACAGTTATTAAAAATATGGAAAAATCGTTTGGTAAAGGTGCAGTAATGAAATT
AGGAGATCGTACTGACCGTAACGTCTCTACAGTATCAAGCGGTTCTATTACATTAGATAGTGCACTTGGTGTTGGTGGTT
ATCCAAAAGGCCGTATTATAGAAATTTATGGTCCTGAAAGTTCAGGTAAGACAACGGTGGCACTACATGCCATTGCAGAG
GTACAGCGTCAAGGTGGCGTTGCCGCGTTTATTGATGCTGAGCATGCGCTTGATCCGATATATGCTAAGAATCTTGGAGT
AGATATCGAAAACCTTTACTTATCTCAACCTGACCACGGTGAACAAGGATTAGAAATTGCAGAAGCATTTGTCAGAAGTG
GTGCGGTAGACATTATTGTGGTCGATTCAGTTGCAGCTTTAACACCTAAAGCGGAAATTGAAGGAGAGATGGGAGACTCG
CATATGGGACTTCAAGCGCGTCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTGTATCGAAGTCTAACACGATTGC
AATATTCATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAAACGACGCCAGGTGGCCGTGCGCTTA
AATTCTATTCTTCAGTACGTCTCGAAGTACGTCGTGCAGAACAATTGAAACAAGGGCAGGAAATTGTAGGTAATAGAACA
AAGATCAAGGTCGTTAAAAACAAAGTTGCACCTCCTTTTAAAGTAGCAGAAGTTGATATTATGTACGGCAAAGGTATTTC
TCGTGAAGGGGAAATCGTTGATTTAGGTGCAGAATATGAAGTGCTGCAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATTGGCCAAGGGCGAGAAAATATTAAGACTTATCTGAAAGAAAACCCAGAAATACGTGACGAAATCGATCAGAAG
ATTCGTAAGGCGATGGGTGTCGGTGCTTCATTAGAAGAGGCATCAGCACAGAAAGAAGAAGTGCCGGTAGAAGATAAGTT
ATTCGACGATGAGTTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

92.635

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

67.989

100

0.68
  recA Streptococcus pneumoniae TIGR4

61.995

100

0.652
  recA Streptococcus pneumoniae Rx1

61.995

100

0.652
  recA Streptococcus pneumoniae D39

61.995

100

0.652
  recA Streptococcus pneumoniae R6

61.995

100

0.652
  recA Streptococcus mitis SK321

62.259

100

0.64
  recA Streptococcus pyogenes NZ131

68.293

92.918

0.635
  recA Streptococcus mutans UA159

67.781

93.201

0.632
  recA Streptococcus mitis NCTC 12261

64.723

97.167

0.629
  recA Acinetobacter baylyi ADP1

64.095

95.467

0.612
  recA Acinetobacter baumannii D1279779

63.422

96.034

0.609
  recA Lactococcus lactis subsp. cremoris KW2

64.545

93.484

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.923

92.068

0.598
  recA Neisseria gonorrhoeae MS11

62.874

94.618

0.595
  recA Neisseria gonorrhoeae MS11

62.874

94.618

0.595
  recA Neisseria gonorrhoeae strain FA1090

62.874

94.618

0.595
  recA Pseudomonas stutzeri DSM 10701

59.599

98.867

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.669

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

93.201

0.581
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Glaesserella parasuis strain SC1401

61.92

91.501

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.635

0.561