Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KYK13_RS06545 Genome accession   NZ_CP079946
Coordinates   1595370..1596395 (-) Length   341 a.a.
NCBI ID   WP_223642810.1    Uniprot ID   -
Organism   Corallococcus sp. EGB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1590370..1601395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK13_RS06525 pssA 1591118..1591975 (+) 858 WP_223642803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  KYK13_RS06530 - 1592045..1593310 (+) 1266 WP_223642804.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  KYK13_RS06535 - 1593307..1594806 (+) 1500 WP_223642806.1 hypothetical protein -
  KYK13_RS06540 - 1594864..1595373 (+) 510 WP_223642808.1 DUF1285 domain-containing protein -
  KYK13_RS06545 recA 1595370..1596395 (-) 1026 WP_223642810.1 recombinase RecA Machinery gene
  KYK13_RS06550 - 1596661..1598058 (+) 1398 WP_370645302.1 NAD(P)/FAD-dependent oxidoreductase -
  KYK13_RS06555 - 1597978..1599618 (-) 1641 WP_223642812.1 YifB family Mg chelatase-like AAA ATPase -
  KYK13_RS06560 - 1599834..1600343 (-) 510 WP_223642814.1 biopolymer transporter ExbD -
  KYK13_RS06565 - 1600343..1600753 (-) 411 WP_223642816.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36037.23 Da        Isoelectric Point: 7.0573

>NTDB_id=590490 KYK13_RS06545 WP_223642810.1 1595370..1596395(-) (recA) [Corallococcus sp. EGB]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAVIPSGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQSVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQVRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNLKEGDSVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVSAGMVEKSGSHFSLRGERIGQGRERACEWLREHPDVLEA
LARDLVGAPSPSAQPSSAEAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=590490 KYK13_RS06545 WP_223642810.1 1595370..1596395(-) (recA) [Corallococcus sp. EGB]
ATGAGCAGGCTGACGGAGAAGCTGAAGGCAGTGGCGGCAGCGGTGGCGTCCATCGAGAAACAGTTCGGCCGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGGTCATCCCCTCGGGCTCGGTGGGGTTGGACCGGGCCCTGG
GCGTGGGGGGCTATCCGCGAGGGCGTGTGGTGGAGCTGTTCGGCAATGAGTCCTCCGGCAAGACGACGCTCACCTTGCAT
GCGATTGCGCAGGTGCAGTCCGTGGGAGGCGTCGCGGCCTTCATCGACGCGGAGCACGCCCTGGACCTGTCCTACGCACG
CAAGCTGGGGGTGCGGACGGAGGAACTGCTCGTGGCTCAGCCGGACACCGGGGAGCAGGCGCTTGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCCGTGGACCTCATCGTGGTGGACTCGGTGGCGGCGCTGGTCCCCCGCGCGGAGATTGAAGGAGAG
ATGGGAGACGCGCACATGGGTGTCCAGGCCCGGCTGATGAGCCAGGCGCTGCGGAAGCTCACGGGCGCCGTGAGCCGCTC
CGGCACCTGCATCATCTTCATCAACCAGGTCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGCG
GCAACGCGCTGAAGTTCTACGCGTCGGTGCGGATGGAGATCCGCCGCACGGGCAACCTCAAGGAGGGCGACTCGGTGGTG
GGCTCACGGGCGCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCCCCATTCCAGGAGGCGGAGTTCGACGTGCTCTATGG
GACGGGCATCCACCGCGCCGCCGAGGTGCTCGACCTGGCCGTAAGCGCGGGCATGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGCCGTGAGCGGGCGTGCGAATGGCTGCGTGAGCACCCGGACGTCCTGGAGGCG
CTTGCCCGCGACCTGGTGGGCGCCCCCTCACCGTCCGCGCAGCCCTCGTCGGCCGAGGCCGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

61.877

100

0.619
  recA Ralstonia pseudosolanacearum GMI1000

66.883

90.323

0.604
  recA Acinetobacter baylyi ADP1

63.24

94.135

0.595
  recA Vibrio cholerae strain A1552

63.636

93.548

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

93.548

0.595
  recA Acinetobacter baumannii D1279779

62.696

93.548

0.587
  recA Neisseria gonorrhoeae MS11

62.342

92.669

0.578
  recA Neisseria gonorrhoeae MS11

62.342

92.669

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.342

92.669

0.578
  recA Glaesserella parasuis strain SC1401

61.25

93.842

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.905

92.375

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.125

94.135

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

91.496

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.434

93.255

0.554
  recA Streptococcus pyogenes NZ131

58.075

94.428

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

95.015

0.548
  recA Helicobacter pylori strain NCTC11637

59.871

90.616

0.543
  recA Helicobacter pylori 26695

59.871

90.616

0.543
  recA Lactococcus lactis subsp. cremoris KW2

56.875

93.842

0.534
  recA Streptococcus mutans UA159

56.875

93.842

0.534
  recA Streptococcus pneumoniae D39

55.901

94.428

0.528
  recA Streptococcus pneumoniae R6

55.901

94.428

0.528
  recA Streptococcus pneumoniae TIGR4

55.901

94.428

0.528
  recA Streptococcus pneumoniae Rx1

55.901

94.428

0.528
  recA Streptococcus mitis SK321

56.782

92.962

0.528
  recA Streptococcus mitis NCTC 12261

55.937

93.842

0.525