Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KYK13_RS06210 Genome accession   NZ_CP079946
Coordinates   1505661..1506749 (+) Length   362 a.a.
NCBI ID   WP_223642720.1    Uniprot ID   -
Organism   Corallococcus sp. EGB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1500661..1511749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK13_RS06195 glmU 1501267..1502667 (+) 1401 WP_223642717.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KYK13_RS06200 glmS 1502773..1504608 (+) 1836 WP_223642718.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  KYK13_RS06205 - 1504835..1505548 (+) 714 WP_223642719.1 hypothetical protein -
  KYK13_RS06210 recA 1505661..1506749 (+) 1089 WP_223642720.1 recombinase RecA Machinery gene
  KYK13_RS06215 - 1507011..1509149 (+) 2139 WP_370645298.1 alkaline phosphatase -
  KYK13_RS06220 - 1509277..1511577 (+) 2301 WP_223642724.1 Tex family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38918.71 Da        Isoelectric Point: 6.8717

>NTDB_id=590489 KYK13_RS06210 WP_223642720.1 1505661..1506749(+) (recA) [Corallococcus sp. EGB]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSISLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISREGDLIDLASNENIIEKSGSWFSFKGERIGQGRENAKEYLREHPETYK
EVEGLVLEKYGIGKAAGAAAAPAAEASEPAEGEKRPRVKAVK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=590489 KYK13_RS06210 WP_223642720.1 1505661..1506749(+) (recA) [Corallococcus sp. EGB]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGCTGGCGGCGGTGGAGCGTCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGTTCGATTTCACTCGATATCGCGT
TGGGCGTGGGCGGCGTGCCGCGCGGCCGCATCATCGAAATCTTCGGGCCGGAGTCCTCCGGTAAGACGACGCTGTGCCTC
CACATCGTCGCGGAAGCGCAGAAGCGCGGCGGCGTGTGCGGCTACATCGACGCGGAGCACGCGATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGGCTGGAGATCGCGGAGA
TGCTGGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTGGAAGGC
GAGATGGGCGACGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCCGAGACCACGACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGAAGTGGAATTCGACATCATGTA
CGGCGCGGGCATCTCGCGTGAGGGCGACCTCATCGACCTGGCCTCCAACGAGAACATCATCGAGAAGAGCGGCAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGAGACCTACAAG
GAGGTGGAGGGCCTGGTGCTGGAGAAGTACGGCATCGGCAAGGCCGCCGGCGCGGCGGCTGCCCCCGCGGCGGAGGCCTC
CGAGCCCGCGGAAGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.889

87.017

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

65.749

90.331

0.594
  recA Pseudomonas stutzeri DSM 10701

62.391

94.751

0.591
  recA Vibrio cholerae strain A1552

66.355

88.674

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

88.674

0.588
  recA Acinetobacter baylyi ADP1

60.807

95.856

0.583
  recA Neisseria gonorrhoeae MS11

65.421

88.674

0.58
  recA Neisseria gonorrhoeae MS11

65.421

88.674

0.58
  recA Neisseria gonorrhoeae strain FA1090

65.421

88.674

0.58
  recA Glaesserella parasuis strain SC1401

65.204

88.122

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.934

91.436

0.566
  recA Helicobacter pylori strain NCTC11637

61.446

91.713

0.564
  recA Acinetobacter baumannii D1279779

63.551

88.674

0.564
  recA Streptococcus pneumoniae TIGR4

61.631

91.436

0.564
  recA Streptococcus pneumoniae Rx1

61.631

91.436

0.564
  recA Streptococcus pneumoniae D39

61.631

91.436

0.564
  recA Streptococcus pneumoniae R6

61.631

91.436

0.564
  recA Helicobacter pylori 26695

60.843

91.713

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.468

90.331

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

89.503

0.555
  recA Streptococcus mitis NCTC 12261

60.423

91.436

0.552
  recA Streptococcus mitis SK321

60.423

91.436

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

91.713

0.55
  recA Streptococcus pyogenes NZ131

60

91.16

0.547
  recA Streptococcus mutans UA159

58.006

91.436

0.53
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.436

0.53