Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KYT87_RS07970 Genome accession   NZ_CP079940
Coordinates   1781879..1782940 (+) Length   353 a.a.
NCBI ID   WP_006218338.1    Uniprot ID   A0A2S5GUX3
Organism   Achromobacter sp. ES-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776879..1787940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYT87_RS07950 (KYT87_07950) - 1776898..1777107 (+) 210 WP_046802820.1 hypothetical protein -
  KYT87_RS07955 (KYT87_07955) - 1777493..1779154 (-) 1662 WP_046802821.1 MFS transporter -
  KYT87_RS07960 (KYT87_07960) - 1779385..1780761 (-) 1377 WP_219992609.1 sensor histidine kinase -
  KYT87_RS07965 (KYT87_07965) - 1780874..1781563 (-) 690 WP_006218337.1 response regulator transcription factor -
  KYT87_RS07970 (KYT87_07970) recA 1781879..1782940 (+) 1062 WP_006218338.1 recombinase RecA Machinery gene
  KYT87_RS07975 (KYT87_07975) recX 1783134..1783943 (+) 810 WP_219991968.1 recombination regulator RecX -
  KYT87_RS07980 (KYT87_07980) - 1784018..1784938 (-) 921 WP_104143206.1 LysR family transcriptional regulator -
  KYT87_RS07985 (KYT87_07985) metE 1785083..1787380 (+) 2298 WP_219991969.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38016.40 Da        Isoelectric Point: 5.3334

>NTDB_id=590341 KYT87_RS07970 WP_006218338.1 1781879..1782940(+) (recA) [Achromobacter sp. ES-001]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKIGGTCAFVDAEHALDVQYANKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
RDMAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=590341 KYT87_RS07970 WP_006218338.1 1781879..1782940(+) (recA) [Achromobacter sp. ES-001]
ATGGACGACAAAACCACCAAGGCCGCCGCATCGGAAAAGGCCAAGGCGCTTGCCGCCGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGTTACGGCGATAACGAGGTCTCGCACGATATCCAGGTGGTTTCCACGGGGTCGTTGG
GTCTGGACATCGCCTTGGGCGTCGGCGGCCTGCCGCGCGGCCGTGTGGTCGAAATCTACGGCCCGGAATCGTCGGGCAAG
ACCACGCTGACGCTGCAAGTCATCGCCGAAATGCAAAAAATCGGTGGCACCTGCGCCTTTGTCGACGCCGAGCACGCGCT
GGACGTCCAATACGCCAACAAGCTGGGCGTGAACCTGACGGACCTGTTGATCTCGCAGCCCGACACGGGCGAGCAAGCGC
TGGAAATCACCGATGCGCTGGTGCGTTCGGGTTCGGTTGACCTGATCGTCATCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCTGAAATCGAAGGCGAAATGGGCGATTCCCTGCCGGGCCTGCAAGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACGATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACGGGCGGCAACGCGCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGCCGCATCGGCTCCATCAAG
AAGGGTGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAAGCGGA
ATTCGACATCATGTACGGCGCCGGTATTTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGCCGCCAATGTGGTGGACA
AGTCGGGTGCGTGGTACAGCTACAACGGCAACCGCATCGGCCAGGGCAAGGACAACGTCCGCGAATACCTGAAAGAGCAC
CGCGACATGGCGATCGAAATCGAAAACCGAGTTCGCGAGAACCAGGGCATCGTCAGCCGCGCCGCTGAATTCGTGCCCAC
GGCGGAAGACACCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5GUX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.534

99.717

0.813
  recA Pseudomonas stutzeri DSM 10701

72.141

96.601

0.697
  recA Acinetobacter baylyi ADP1

69.795

96.601

0.674
  recA Vibrio cholerae strain A1552

73.52

90.935

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

90.935

0.669
  recA Acinetobacter baumannii D1279779

73.209

90.935

0.666
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.918

0.666
  recA Glaesserella parasuis strain SC1401

71.651

90.935

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.565

94.334

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.865

96.884

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Helicobacter pylori 26695

60.807

98.3

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.635

0.598
  recA Helicobacter pylori strain NCTC11637

60.519

98.3

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569
  recA Streptococcus pneumoniae Rx1

58.824

96.317

0.567
  recA Streptococcus pneumoniae D39

58.824

96.317

0.567
  recA Streptococcus pneumoniae R6

58.824

96.317

0.567
  recA Streptococcus pneumoniae TIGR4

58.824

96.317

0.567
  recA Lactococcus lactis subsp. cremoris KW2

58.824

96.317

0.567
  recA Streptococcus mitis SK321

58.235

96.317

0.561
  recA Streptococcus mitis NCTC 12261

58.235

96.317

0.561
  recA Streptococcus pyogenes NZ131

58.806

94.901

0.558
  recA Streptococcus mutans UA159

57.059

96.317

0.55