Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HV822_RS04080 Genome accession   NZ_CP079801
Coordinates   874776..875813 (-) Length   345 a.a.
NCBI ID   WP_238872497.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 869776..880813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS04050 (HV822_04050) - 870263..870910 (-) 648 WP_238872491.1 response regulator transcription factor -
  HV822_RS04055 (HV822_04055) - 871089..872027 (+) 939 WP_238872492.1 DMT family transporter -
  HV822_RS04060 (HV822_04060) - 872021..872704 (-) 684 WP_238872493.1 tRNA-uridine aminocarboxypropyltransferase -
  HV822_RS04065 (HV822_04065) - 872864..873262 (+) 399 WP_238872494.1 PA3611 family quorum-sensing-regulated virulence factor -
  HV822_RS04070 (HV822_04070) - 873275..874360 (+) 1086 WP_238872495.1 LOG family protein -
  HV822_RS04075 (HV822_04075) - 874320..874763 (-) 444 WP_238872496.1 regulatory protein RecX -
  HV822_RS04080 (HV822_04080) recA 874776..875813 (-) 1038 WP_238872497.1 recombinase RecA Machinery gene
  HV822_RS04085 (HV822_04085) - 875926..876447 (-) 522 WP_238872498.1 CinA family protein -
  HV822_RS04090 (HV822_04090) - 876596..878242 (-) 1647 WP_238872499.1 hypothetical protein -
  HV822_RS04095 (HV822_04095) - 878321..880432 (-) 2112 WP_238872500.1 ATP-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36952.25 Da        Isoelectric Point: 5.7689

>NTDB_id=589546 HV822_RS04080 WP_238872497.1 874776..875813(-) (recA) [Halopseudomonas maritima strain RR6]
MDDNKKKALSAALSQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKQGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
HHVGVQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGAGIYHNAEIIDLGVQIGLVEKSGAWYSYQGNKIGQGKANAAKFLQDNQAIAEEIEK
AIREKLLAKPGKAKAETEADAELED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=589546 HV822_RS04080 WP_238872497.1 874776..875813(-) (recA) [Halopseudomonas maritima strain RR6]
ATGGACGATAACAAAAAGAAGGCGCTGTCGGCGGCCTTGAGTCAGATTGAACGTCAGTTTGGCAAGGGGGCCGTGATGCG
CATGGGTGATCATGAGCGCCAGGCCATTCCGGCCATCTCTACCGGCTCGCTCGGCCTGGATATCGCCCTCGGTATTGGCG
GCCTGCCCAAAGGCCGTATCGTTGAAATTTATGGTCCGGAGTCCTCCGGTAAAACCACCCTGACGCTGTCGGTCATCGCC
CAAGCGCAGAAGCAAGGCGCTACCTGTGCCTTCGTCGATGCCGAACACGCACTGGACCCGGAGTACGCTGGCAAGTTGGG
TGTTAACGTTGACGACCTGCTGGTGTCCCAGCCTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTAGCGGCACTGGTGCCCAAGGCCGAGATTGAAGGCGAGATGGGTGAC
CACCACGTAGGTGTACAGGCCCGCCTGATGTCGCAGGCGCTGCGTAAGATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGCGTGATGTTCGGTAACCCGGAAACCACTACCGGCGGTAACGCCC
TCAAGTTCTACTCCTCTGTTCGTCTGGATATCCGCCGTACCGGCGCGGTGAAAGAGGGCGACGAGGTGGTTGGCAGCGAG
ACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCGCAGGCAT
TTATCACAACGCCGAGATTATCGACTTGGGTGTGCAGATTGGCCTGGTTGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCTAACGCTGCCAAGTTCCTGCAGGATAACCAGGCAATCGCCGAGGAAATCGAAAAG
GCCATCCGTGAGAAGCTGCTGGCCAAGCCCGGCAAGGCCAAGGCGGAAACCGAGGCTGACGCCGAACTGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.455

100

0.87
  recA Acinetobacter baylyi ADP1

73.988

100

0.742
  recA Acinetobacter baumannii D1279779

73.333

100

0.733
  recA Glaesserella parasuis strain SC1401

70.175

99.13

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

94.783

0.696
  recA Vibrio cholerae strain A1552

73.394

94.783

0.696
  recA Ralstonia pseudosolanacearum GMI1000

70.206

98.261

0.69
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.913

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.783

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.424

97.681

0.6
  recA Helicobacter pylori strain NCTC11637

62.997

94.783

0.597
  recA Helicobacter pylori 26695

62.385

94.783

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

93.043

0.586
  recA Streptococcus mutans UA159

60

94.203

0.565
  recA Streptococcus mitis NCTC 12261

56.765

98.551

0.559
  recA Streptococcus mitis SK321

56.471

98.551

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

93.043

0.554
  recA Streptococcus pyogenes NZ131

57.927

95.072

0.551
  recA Streptococcus pneumoniae TIGR4

58.282

94.493

0.551
  recA Streptococcus pneumoniae D39

58.282

94.493

0.551
  recA Streptococcus pneumoniae Rx1

58.282

94.493

0.551
  recA Streptococcus pneumoniae R6

58.282

94.493

0.551
  recA Lactococcus lactis subsp. cremoris KW2

56.037

93.623

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.692

94.203

0.525