Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EGT72_RS06325 Genome accession   NZ_CP079792
Coordinates   1305403..1306446 (-) Length   347 a.a.
NCBI ID   WP_005401034.1    Uniprot ID   A0A1T1JM42
Organism   Acinetobacter johnsonii strain AJ_082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1300403..1311446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS06295 (EGT72_006295) lpxD 1300612..1301679 (+) 1068 WP_125280535.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  EGT72_RS06300 (EGT72_006300) fabZ 1301687..1302172 (+) 486 WP_010326983.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EGT72_RS06305 (EGT72_006305) lpxA 1302169..1302957 (+) 789 WP_010326982.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  EGT72_RS06310 (EGT72_006310) - 1303017..1303853 (-) 837 WP_125280536.1 YbgF trimerization domain-containing protein -
  EGT72_RS06320 (EGT72_006320) - 1304692..1305297 (-) 606 WP_125280537.1 regulatory protein RecX -
  EGT72_RS06325 (EGT72_006325) recA 1305403..1306446 (-) 1044 WP_005401034.1 recombinase RecA Machinery gene
  EGT72_RS06330 (EGT72_006330) - 1306561..1307004 (-) 444 WP_004696588.1 S4 domain-containing protein -
  EGT72_RS06335 (EGT72_006335) - 1306997..1307671 (-) 675 WP_125280538.1 HAD-IA family hydrolase -
  EGT72_RS06340 (EGT72_006340) - 1308227..1308484 (+) 258 Protein_1220 transposase -
  EGT72_RS06345 (EGT72_006345) - 1308543..1309244 (+) 702 Protein_1221 IS1 family transposase -
  EGT72_RS06350 (EGT72_006350) - 1309272..1309955 (+) 684 Protein_1222 IS5 family transposase -
  EGT72_RS06355 (EGT72_006355) - 1310188..1310433 (+) 246 WP_004696593.1 hypothetical protein -
  EGT72_RS06360 (EGT72_006360) - 1310752..1310997 (+) 246 WP_058951775.1 hypothetical protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37602.01 Da        Isoelectric Point: 5.0433

>NTDB_id=589516 EGT72_RS06325 WP_005401034.1 1305403..1306446(-) (recA) [Acinetobacter johnsonii strain AJ_082]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=589516 EGT72_RS06325 WP_005401034.1 1305403..1306446(-) (recA) [Acinetobacter johnsonii strain AJ_082]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCAAAAGGTCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATTGATGCAGAACACGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAATCTACTGGTTTCTCAGCCTGACCATGGTGAGCAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCCATTGACCTCATCGTTGTCGACTCTGTTGCAGCATTGACACCACGTGCGGAAATTGAAGGTGAAATGGGCGAC
TCACACATGGGCCTCCAAGCACGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGTTCAAACTGTAT
GGTAATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGTCGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTCAAAAACAAAATGGCACCTCCATTCCGCGAAGCGCTCTTCCAAATTTTATATGGTAAAGGCGT
CAACCACTTGGGCGAACTCGTAGACTTAGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GCGACAAAATCGGTCAAGGTAAAAATAATGTGATCCGTCACCTTGAAGAAAACCCTCAGTTGGCTGAAACCATTGAGAAA
ATCATTCGAGAAAAACTACTGACGACTGCAAACGCTGCGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTTTTAGATGC
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1T1JM42

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922

  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908

  recA Pseudomonas stutzeri DSM 10701

74.063

100

0.741

  recA Vibrio cholerae strain A1552

71.429

98.847

0.706

  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

98.847

0.706

  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677

  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614

  recA Helicobacter pylori strain NCTC11637

62.202

96.83

0.602

  recA Helicobacter pylori 26695

61.905

96.83

0.599

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579

  recA Streptococcus pneumoniae R6

61.656

93.948

0.579

  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579

  recA Streptococcus pneumoniae D39

61.656

93.948

0.579

  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579

  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576

  recA Streptococcus mutans UA159

61.538

93.66

0.576

  recA Streptococcus mitis SK321

61.3

93.084

0.571

  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571

  recA Latilactobacillus sakei subsp. sakei 23K

57.567

97.118

0.559

  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545