Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KYX59_RS11530 | Genome accession | NZ_CP079780 |
| Coordinates | 1910605..1911666 (-) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain BL12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1881772..1918675 | 1910605..1911666 | within | 0 |
Gene organization within MGE regions
Location: 1881772..1918675
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX59_RS11355 (KYX59_11285) | - | 1882526..1883443 (+) | 918 | Protein_1851 | GABA permease | - |
| KYX59_RS11360 (KYX59_11290) | csiR | 1883464..1884126 (+) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| KYX59_RS11365 (KYX59_11295) | kbp | 1884127..1884576 (-) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| KYX59_RS11370 (KYX59_11300) | yqaE | 1884660..1884818 (-) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| KYX59_RS11375 (KYX59_11305) | ygaV | 1885001..1885300 (+) | 300 | WP_000137280.1 | helix-turn-helix transcriptional regulator | - |
| KYX59_RS11380 (KYX59_11310) | ygaP | 1885310..1885834 (+) | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| KYX59_RS11385 (KYX59_11315) | stpA | 1885881..1886285 (-) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| KYX59_RS11390 (KYX59_11320) | alaE | 1886954..1887403 (+) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| KYX59_RS11395 (KYX59_11325) | ygaC | 1887440..1887784 (-) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| KYX59_RS11400 (KYX59_11330) | ygaM | 1887936..1888265 (+) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| KYX59_RS11405 (KYX59_11335) | nrdH | 1888513..1888758 (+) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| KYX59_RS11410 (KYX59_11340) | nrdI | 1888755..1889165 (+) | 411 | WP_170878211.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| KYX59_RS11415 (KYX59_11345) | nrdE | 1889138..1891282 (+) | 2145 | WP_000246527.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| KYX59_RS11420 (KYX59_11350) | nrdF | 1891292..1892251 (+) | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| KYX59_RS11425 (KYX59_11355) | proV | 1892605..1893807 (+) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| KYX59_RS11430 (KYX59_11360) | proW | 1893800..1894864 (+) | 1065 | WP_000774988.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| KYX59_RS11435 (KYX59_11365) | proX | 1894922..1895914 (+) | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| KYX59_RS11440 (KYX59_11370) | - | 1896206..1897390 (+) | 1185 | WP_000165673.1 | MFS transporter | - |
| KYX59_RS11445 (KYX59_11375) | ygaZ | 1897514..1898251 (+) | 738 | WP_115735703.1 | L-valine exporter subunit YgaZ | - |
| KYX59_RS11450 (KYX59_11380) | ygaH | 1898241..1898576 (+) | 336 | WP_000119766.1 | L-valine transporter subunit YgaH | - |
| KYX59_RS11455 (KYX59_11385) | emrR | 1898667..1899197 (+) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| KYX59_RS11460 (KYX59_11390) | emrA | 1899324..1900496 (+) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| KYX59_RS11465 (KYX59_11395) | emrB | 1900513..1902051 (+) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| KYX59_RS11470 (KYX59_11400) | luxS | 1902115..1902630 (-) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | - |
| KYX59_RS11475 (KYX59_11405) | gshA | 1902780..1904336 (-) | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| KYX59_RS11480 (KYX59_11410) | yqaA | 1904409..1904837 (-) | 429 | WP_001287454.1 | YqaA family protein | - |
| KYX59_RS11485 (KYX59_11415) | yqaB | 1904834..1905400 (-) | 567 | WP_000273289.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| KYX59_RS11515 (KYX59_11445) | csrA | 1906858..1907043 (-) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| KYX59_RS11520 (KYX59_11450) | alaS | 1907278..1909908 (-) | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| KYX59_RS11525 (KYX59_11455) | recX | 1910036..1910536 (-) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| KYX59_RS11530 (KYX59_11460) | recA | 1910605..1911666 (-) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| KYX59_RS11535 (KYX59_11465) | pncC | 1911746..1912243 (-) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| KYX59_RS11540 (KYX59_11470) | mltB | 1912388..1913473 (-) | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| KYX59_RS11545 (KYX59_11475) | srlA | 1913729..1914292 (+) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| KYX59_RS11550 (KYX59_11480) | srlE | 1914289..1915248 (+) | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| KYX59_RS11555 (KYX59_11485) | srlB | 1915259..1915630 (+) | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| KYX59_RS11560 (KYX59_11490) | srlD | 1915634..1916413 (+) | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| KYX59_RS11565 (KYX59_11495) | gutM | 1916518..1916877 (+) | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| KYX59_RS11570 (KYX59_11500) | srlR | 1916944..1917717 (+) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| KYX59_RS11575 (KYX59_11505) | gutQ | 1917710..1918675 (+) | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=589457 KYX59_RS11530 WP_000963143.1 1910605..1911666(-) (recA) [Escherichia coli strain BL12]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=589457 KYX59_RS11530 WP_000963143.1 1910605..1911666(-) (recA) [Escherichia coli strain BL12]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.