Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SPISAL_RS03840 Genome accession   NC_021291
Coordinates   764751..765803 (+) Length   350 a.a.
NCBI ID   WP_016353154.1    Uniprot ID   R4VK05
Organism   Spiribacter salinus M19-40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 759751..770803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPISAL_RS03805 (SPISAL_03730) - 760057..761223 (-) 1167 WP_016353147.1 MFS transporter -
  SPISAL_RS08930 (SPISAL_03735) - 761287..761526 (+) 240 WP_016353148.1 hypothetical protein -
  SPISAL_RS03815 (SPISAL_03740) - 761516..761779 (+) 264 WP_016353149.1 DUF2249 domain-containing protein -
  SPISAL_RS03820 (SPISAL_03745) - 761761..762792 (-) 1032 WP_016353150.1 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein -
  SPISAL_RS03825 (SPISAL_03750) - 762873..763631 (+) 759 WP_016353151.1 VIT1/CCC1 transporter family protein -
  SPISAL_RS03830 (SPISAL_03755) - 763663..764130 (+) 468 WP_016353152.1 universal stress protein -
  SPISAL_RS03835 (SPISAL_03760) - 764139..764654 (+) 516 WP_016353153.1 nicotinamide-nucleotide amidohydrolase family protein -
  SPISAL_RS03840 (SPISAL_03765) recA 764751..765803 (+) 1053 WP_016353154.1 recombinase RecA Machinery gene
  SPISAL_RS03845 (SPISAL_03770) - 765809..766282 (+) 474 WP_016353155.1 regulatory protein RecX -
  SPISAL_RS03850 (SPISAL_03775) alaS 766295..768898 (+) 2604 WP_016353156.1 alanine--tRNA ligase -
  SPISAL_RS03855 (SPISAL_03780) - 768920..770197 (+) 1278 WP_016353157.1 aspartate kinase -
  SPISAL_RS03860 (SPISAL_03785) csrA 770368..770571 (+) 204 WP_016353158.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37419.52 Da        Isoelectric Point: 5.0650

>NTDB_id=58900 SPISAL_RS03840 WP_016353154.1 764751..765803(+) (recA) [Spiribacter salinus M19-40]
MDNDRKKALGAALGQIEKQFGKGAVMRMGDARAVGNIPVISTGSLTLDIALGVGGIPRGRVVEIYGPESSGKTTLTLQAI
AEAQRAGGTAAFVDAEHALDPDYAGKLGVDVDELLVSQPDTGEQALEIADMLVRSSAVDIVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGAIKKGDEVIGN
ETRVKVVKNKMAPPFRQAEFEILYGEGISQEGELIDLGVKEGLIEKSGAWYSYNGDRIGQGKDNVRNHLKEHPAIADELR
QVLRERLLPKPAGGQTDSTEAEPNEADADA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=58900 SPISAL_RS03840 WP_016353154.1 764751..765803(+) (recA) [Spiribacter salinus M19-40]
ATGGACAACGATCGCAAGAAAGCCCTGGGTGCGGCACTCGGGCAGATTGAAAAGCAGTTCGGTAAGGGTGCGGTGATGCG
CATGGGCGACGCCCGTGCCGTCGGGAATATCCCCGTTATCTCGACGGGCTCACTGACGCTTGACATTGCGCTGGGTGTCG
GGGGCATACCACGCGGCCGAGTCGTCGAGATCTATGGGCCGGAATCGTCCGGTAAGACAACCTTAACGCTGCAGGCCATT
GCCGAGGCGCAGCGCGCAGGCGGGACCGCGGCGTTCGTGGATGCCGAGCATGCCCTTGATCCGGACTACGCGGGCAAGCT
CGGTGTGGATGTTGATGAGTTGCTGGTCTCTCAGCCCGATACGGGTGAACAGGCCCTTGAGATCGCGGACATGCTGGTGC
GCTCCAGTGCGGTGGACATCGTCGTGGTCGACTCGGTCGCCGCACTAACACCCAAAGCCGAGATCGAAGGCGAGATGGGT
GACTCCCACGTCGGGCTGCAGGCTCGGCTGATGTCGCAGGCGCTGCGCAAGCTCACTGCCAACATCAAGCGCTCGAATAC
CACGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGTAGTCCAGAGACCACAACGGGCGGGAACG
CGCTGAAGTTCTACTCCTCGGTTCGCATGGATATCCGCCGCATCGGCGCCATTAAGAAGGGCGATGAGGTGATCGGCAAC
GAAACGCGGGTCAAGGTGGTGAAAAACAAGATGGCCCCGCCATTCCGTCAGGCCGAATTCGAGATCCTCTATGGCGAGGG
CATCTCCCAGGAAGGTGAACTCATCGACCTTGGGGTCAAGGAAGGCCTGATCGAGAAATCCGGCGCCTGGTATAGCTATA
ACGGGGACCGGATCGGGCAGGGCAAGGACAATGTCCGCAATCATCTCAAAGAGCATCCGGCGATTGCCGATGAGCTGCGG
CAGGTCCTGCGTGAGCGGCTGCTGCCAAAGCCAGCCGGCGGGCAGACCGACTCCACAGAGGCCGAGCCGAATGAGGCCGA
TGCCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4VK05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.499

99.714

0.743
  recA Acinetobacter baylyi ADP1

72.911

99.143

0.723
  recA Neisseria gonorrhoeae MS11

75.617

92.571

0.7
  recA Neisseria gonorrhoeae strain FA1090

75.617

92.571

0.7
  recA Neisseria gonorrhoeae MS11

75.617

92.571

0.7
  recA Acinetobacter baumannii D1279779

70.145

98.571

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.78

93.714

0.691
  recA Vibrio cholerae strain A1552

73.78

93.714

0.691
  recA Ralstonia pseudosolanacearum GMI1000

72.948

94

0.686
  recA Glaesserella parasuis strain SC1401

69.419

93.429

0.649
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

95.429

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.432

92.571

0.606
  recA Helicobacter pylori strain NCTC11637

64.329

93.714

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.024

93.714

0.6
  recA Helicobacter pylori 26695

64.024

93.714

0.6
  recA Streptococcus mutans UA159

62.883

93.143

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

63.354

92

0.583
  recA Streptococcus pyogenes NZ131

61.398

94

0.577
  recA Streptococcus mitis SK321

57.759

99.429

0.574
  recA Streptococcus pneumoniae D39

61.28

93.714

0.574
  recA Streptococcus pneumoniae R6

61.28

93.714

0.574
  recA Streptococcus pneumoniae TIGR4

61.28

93.714

0.574
  recA Streptococcus pneumoniae Rx1

61.28

93.714

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.923

92.857

0.566
  recA Streptococcus mitis NCTC 12261

60.923

92.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

93.429

0.557

Multiple sequence alignment