Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KV708_RS25955 Genome accession   NZ_CP079703
Coordinates   5632649..5633758 (-) Length   369 a.a.
NCBI ID   WP_057094139.1    Uniprot ID   A0A1Y1J6U0
Organism   Comamonas thiooxydans strain N1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5627649..5638758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV708_RS25935 (KV708_25820) argC 5629114..5630046 (+) 933 WP_057094131.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  KV708_RS25940 (KV708_25825) yddG 5630247..5631167 (+) 921 WP_057094133.1 aromatic amino acid DMT transporter YddG -
  KV708_RS25945 (KV708_25830) - 5631192..5631926 (-) 735 WP_057094135.1 hypothetical protein -
  KV708_RS25950 (KV708_25835) recX 5631989..5632465 (-) 477 WP_057094137.1 recombination regulator RecX -
  KV708_RS25955 (KV708_25840) recA 5632649..5633758 (-) 1110 WP_057094139.1 recombinase RecA Machinery gene
  KV708_RS25960 (KV708_25845) - 5633897..5634388 (+) 492 WP_012840368.1 MarR family winged helix-turn-helix transcriptional regulator -
  KV708_RS25965 (KV708_25850) - 5634515..5635192 (+) 678 WP_003064757.1 response regulator transcription factor -
  KV708_RS25970 (KV708_25855) - 5635303..5636745 (+) 1443 WP_003064759.1 sensor histidine kinase -
  KV708_RS25975 (KV708_25860) - 5636966..5637943 (+) 978 WP_057094141.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39075.91 Da        Isoelectric Point: 5.3847

>NTDB_id=588737 KV708_RS25955 WP_057094139.1 5632649..5633758(-) (recA) [Comamonas thiooxydans strain N1]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRDSLGIKLLPVDGAAAAEAKPAKGGKGKVDKDGVIEG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=588737 KV708_RS25955 WP_057094139.1 5632649..5633758(-) (recA) [Comamonas thiooxydans strain N1]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCTTGGCTGCCGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGTGAAGGTGAAGCCATCGAAGACATTCAGGTCGTTTCCACCGGCTCCC
TGGGTCTGGACATCGCGCTGGGCGTAGGTGGTCTGCCCCGCGGCCGCGTGATCGAAATCTACGGTCCCGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCCTTTATCGACGCCGAACATGC
GCTGGACACCAGCTATGCCCAGAAGCTGGGCGTGAACCTCAGCGACGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CTCTGGAAATCTGCGACAGTCTGGTGCGTTCGGGTGCCGTGGACCTGATCGTCATTGACTCGGTGGCCGCATTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAGACCACCACCGGCGGCAATGCGTTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCCCCCTTCAAGACGGC
AGAGTTCGACATCCTGTTTGGCGAGGGCATCAGCCGCGAAGGCGAGATCCTGGACATGGGCGTGAATGCCAAGATTCTGG
AAAAGAGCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGCGAGTTCCTGCGCGAA
AACCCCGCGCTGGCCATCGAAATCGAAAACAAGGTGCGCGATAGCCTGGGCATCAAGCTGCTGCCTGTGGACGGTGCTGC
GGCTGCCGAAGCCAAGCCTGCCAAGGGCGGCAAGGGCAAGGTGGACAAGGACGGAGTGATTGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y1J6U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.758

85.095

0.713
  recA Neisseria gonorrhoeae strain FA1090

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Pseudomonas stutzeri DSM 10701

71.472

88.347

0.631
  recA Glaesserella parasuis strain SC1401

71.296

87.805

0.626
  recA Acinetobacter baylyi ADP1

69.632

88.347

0.615
  recA Acinetobacter baumannii D1279779

69.632

88.347

0.615
  recA Vibrio cholerae strain A1552

69.632

88.347

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

88.347

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.082

92.683

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.431

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  recA Helicobacter pylori strain NCTC11637

64.024

88.889

0.569
  recA Helicobacter pylori 26695

64.024

88.889

0.569
  recA Streptococcus mutans UA159

57.5

97.561

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

90.244

0.561
  recA Streptococcus mitis SK321

59.42

93.496

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.714

91.057

0.553
  recA Streptococcus mitis NCTC 12261

59.13

93.496

0.553
  recA Streptococcus pneumoniae Rx1

59.184

92.954

0.55
  recA Streptococcus pneumoniae D39

59.184

92.954

0.55
  recA Streptococcus pneumoniae R6

59.184

92.954

0.55
  recA Streptococcus pneumoniae TIGR4

59.184

92.954

0.55
  recA Streptococcus pyogenes NZ131

60.597

90.786

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

89.431

0.537