Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BRPE64_RS02235 Genome accession   NC_021287
Coordinates   481301..482371 (+) Length   356 a.a.
NCBI ID   WP_016344388.1    Uniprot ID   -
Organism   Caballeronia insecticola     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 476301..487371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRPE64_RS02220 (BRPE64_ACDS04670) - 476797..478455 (-) 1659 WP_044041140.1 MFS transporter -
  BRPE64_RS02225 (BRPE64_ACDS04690) - 478687..480279 (-) 1593 WP_016344386.1 sensor histidine kinase -
  BRPE64_RS02230 (BRPE64_ACDS04700) - 480289..481017 (-) 729 WP_044041891.1 response regulator transcription factor -
  BRPE64_RS02235 (BRPE64_ACDS04710) recA 481301..482371 (+) 1071 WP_016344388.1 recombinase RecA Machinery gene
  BRPE64_RS02240 (BRPE64_ACDS04720) recX 482401..483432 (+) 1032 WP_016344389.1 recombination regulator RecX -
  BRPE64_RS02245 (BRPE64_ACDS04730) - 483602..484255 (+) 654 WP_044041143.1 DUF2889 domain-containing protein -
  BRPE64_RS02250 (BRPE64_ACDS04740) sucC 484350..485531 (+) 1182 WP_332443927.1 ADP-forming succinate--CoA ligase subunit beta -
  BRPE64_RS02255 (BRPE64_ACDS04750) sucD 485637..486518 (+) 882 WP_014190528.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37897.47 Da        Isoelectric Point: 4.9648

>NTDB_id=58856 BRPE64_RS02235 WP_016344388.1 481301..482371(+) (recA) [Caballeronia insecticola]
MEESKKGPAGMTAEKSKALAAALSQIEKQFGKGSIMRLGAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVQELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGDRIGQGKDNAREFLR
ENPDIAREIENKIRESLGVAAMGEAVVAGAAVADDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=58856 BRPE64_RS02235 WP_016344388.1 481301..482371(+) (recA) [Caballeronia insecticola]
ATGGAAGAAAGCAAGAAAGGCCCGGCTGGAATGACTGCGGAAAAGAGCAAGGCCCTGGCCGCCGCGCTCTCGCAGATCGA
AAAGCAATTCGGCAAAGGGTCGATCATGCGGCTCGGCGCAGGTGAGGCGGTCGAAGACATCCAGGTGGTCTCCACCGGTT
CGCTCGGACTGGACATTGCGCTCGGCGTCGGCGGCTTGCCGCGCGGCCGTGTCGTGGAAATCTACGGTCCGGAGTCGTCG
GGCAAGACCACGCTCACGTTGCAGGTGATCGCCGAAATGCAGAAGCTCGGCGGCACGGCGGCGTTTATCGACGCGGAACA
CGCGCTCGACGTCCAGTACGCGGGCAAGCTCGGCGTGAACGTGCAGGAACTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGCTGGAAATCGCGGACGCGCTGGTGCGCTCCGGCTCCATCGACATGATCGTCATCGACTCCGTCGCGGCGCTCGTG
CCGAAGGCGGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGTCTGCAAGCGCGTTTGATGTCGCAGGCGCTGCGCAA
GCTCACCGGCACGATCAAGCGCACGAACTGTCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAATCCGGAAACCACCACGGGCGGTAACGCGCTGAAGTTCTACTCGTCGGTGCGTCTCGATATCCGCCGCATCGGTTCG
ATCAAGAAGAACGACGAAGTCATCGGCAACGAGACGCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCCGCGA
GGCCATCTTCGACATTCTTTATGGCGAGGGCATCTCGCGTCAGGGCGAAATCATCGACCTGGGCGTGCAGGCCAAGCTCG
TCGACAAAGCAGGCGCCTGGTACAGCTATAACGGCGATCGCATCGGTCAGGGCAAGGACAACGCGCGTGAATTCCTGCGC
GAGAATCCGGACATCGCCCGCGAGATCGAGAACAAGATCCGCGAATCGCTGGGCGTGGCTGCAATGGGCGAAGCCGTCGT
CGCGGGCGCCGCAGTGGCGGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.057

97.753

0.831
  recA Neisseria gonorrhoeae MS11

74.468

92.416

0.688
  recA Neisseria gonorrhoeae MS11

74.468

92.416

0.688
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.416

0.688
  recA Glaesserella parasuis strain SC1401

67.218

100

0.685
  recA Pseudomonas stutzeri DSM 10701

73.414

92.978

0.683
  recA Acinetobacter baylyi ADP1

74.312

91.854

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.565

96.91

0.674
  recA Vibrio cholerae strain A1552

69.565

96.91

0.674
  recA Acinetobacter baumannii D1279779

73.089

91.854

0.671
  recA Bacillus subtilis subsp. subtilis str. 168

66.361

91.854

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.416

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.565

93.539

0.604
  recA Helicobacter pylori 26695

65.031

91.573

0.596
  recA Helicobacter pylori strain NCTC11637

64.724

91.573

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

62.651

93.258

0.584
  recA Streptococcus mutans UA159

61.818

92.697

0.573
  recA Streptococcus mitis NCTC 12261

60.725

92.978

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.36

93.539

0.565
  recA Streptococcus pneumoniae Rx1

60.423

92.978

0.562
  recA Streptococcus mitis SK321

60.423

92.978

0.562
  recA Streptococcus pneumoniae D39

60.423

92.978

0.562
  recA Streptococcus pneumoniae R6

60.423

92.978

0.562
  recA Streptococcus pneumoniae TIGR4

60.423

92.978

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

90.169

0.556
  recA Streptococcus pyogenes NZ131

60.182

92.416

0.556

Multiple sequence alignment