Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PFLCHA0_RS06325 | Genome accession | NC_021237 |
| Coordinates | 1421440..1422492 (+) | Length | 350 a.a. |
| NCBI ID | WP_011059579.1 | Uniprot ID | A0A2C9EHI1 |
| Organism | Pseudomonas protegens CHA0 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1386084..1420686 | 1421440..1422492 | flank | 754 |
Gene organization within MGE regions
Location: 1386084..1422492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFLCHA0_RS31060 (PFLCHA0_c12270) | - | 1386084..1386944 (+) | 861 | WP_011059553.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PFLCHA0_RS06125 (PFLCHA0_c12280) | rpoS | 1387051..1388058 (+) | 1008 | WP_011059554.1 | RNA polymerase sigma factor RpoS | - |
| PFLCHA0_RS06130 (PFLCHA0_c12290) | fdxA | 1388570..1388893 (-) | 324 | WP_011059555.1 | ferredoxin FdxA | - |
| PFLCHA0_RS06135 (PFLCHA0_c12300) | mutS | 1389037..1391616 (-) | 2580 | WP_011059556.1 | DNA mismatch repair protein MutS | - |
| PFLCHA0_RS06140 (PFLCHA0_c12310) | - | 1391803..1392549 (+) | 747 | WP_041751977.1 | helix-turn-helix transcriptional regulator | - |
| PFLCHA0_RS06145 (PFLCHA0_c12320) | - | 1393066..1393416 (+) | 351 | WP_011059558.1 | phage holin family protein | - |
| PFLCHA0_RS06150 | - | 1393505..1394026 (+) | 522 | WP_041751978.1 | hypothetical protein | - |
| PFLCHA0_RS06155 (PFLCHA0_c12330) | - | 1394023..1394613 (+) | 591 | WP_041751979.1 | phage baseplate assembly protein V | - |
| PFLCHA0_RS06160 (PFLCHA0_c12340) | - | 1394706..1394909 (+) | 204 | WP_015634348.1 | hypothetical protein | - |
| PFLCHA0_RS06165 (PFLCHA0_c12350) | - | 1394914..1395240 (+) | 327 | WP_015634349.1 | GPW/gp25 family protein | - |
| PFLCHA0_RS06170 (PFLCHA0_c12360) | - | 1395237..1396118 (+) | 882 | WP_015634350.1 | baseplate J/gp47 family protein | - |
| PFLCHA0_RS06175 (PFLCHA0_c12370) | - | 1396120..1396725 (+) | 606 | WP_015634351.1 | phage tail protein I | - |
| PFLCHA0_RS06180 (PFLCHA0_c12380) | - | 1396722..1397948 (+) | 1227 | WP_015634352.1 | phage tail protein | - |
| PFLCHA0_RS31630 | - | 1397948..1398718 (+) | 771 | WP_134532553.1 | hypothetical protein | - |
| PFLCHA0_RS30895 | - | 1398715..1399167 (+) | 453 | WP_134532557.1 | phage tail assembly chaperone | - |
| PFLCHA0_RS06195 (PFLCHA0_c12400) | - | 1399269..1400435 (+) | 1167 | WP_015634354.1 | phage tail sheath family protein | - |
| PFLCHA0_RS06200 (PFLCHA0_c12410) | - | 1400448..1400957 (+) | 510 | WP_015634355.1 | phage major tail tube protein | - |
| PFLCHA0_RS06205 (PFLCHA0_c12420) | - | 1400967..1401272 (+) | 306 | WP_015634356.1 | phage tail assembly protein | - |
| PFLCHA0_RS06210 (PFLCHA0_c12430) | - | 1401414..1403960 (+) | 2547 | WP_015634357.1 | phage tail tape measure protein | - |
| PFLCHA0_RS06215 (PFLCHA0_c12440) | - | 1403970..1404815 (+) | 846 | WP_015634358.1 | phage tail protein | - |
| PFLCHA0_RS06220 (PFLCHA0_c12450) | - | 1404790..1404996 (+) | 207 | WP_015634359.1 | tail protein X | - |
| PFLCHA0_RS06225 (PFLCHA0_c12460) | - | 1405058..1406101 (+) | 1044 | WP_015634360.1 | phage late control D family protein | - |
| PFLCHA0_RS06230 (PFLCHA0_c12470) | - | 1406152..1407288 (+) | 1137 | WP_015634361.1 | glycosyl hydrolase family 18 protein | - |
| PFLCHA0_RS06235 (PFLCHA0_c12480) | - | 1407446..1408027 (+) | 582 | WP_015634362.1 | hypothetical protein | - |
| PFLCHA0_RS06240 (PFLCHA0_c12490) | - | 1408024..1408206 (+) | 183 | WP_011059562.1 | DUF2635 domain-containing protein | - |
| PFLCHA0_RS06245 (PFLCHA0_c12500) | - | 1408206..1409702 (+) | 1497 | WP_015634363.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PFLCHA0_RS06250 (PFLCHA0_c12510) | - | 1409769..1410116 (+) | 348 | WP_011059564.1 | phage tail tube protein | - |
| PFLCHA0_RS06255 (PFLCHA0_c12520) | - | 1410113..1410409 (+) | 297 | WP_011059565.1 | phage tail assembly protein | - |
| PFLCHA0_RS06260 (PFLCHA0_c12540) | - | 1410540..1412138 (+) | 1599 | WP_015634364.1 | hypothetical protein | - |
| PFLCHA0_RS06265 (PFLCHA0_c12550) | - | 1412128..1413372 (+) | 1245 | WP_015634365.1 | DNA circularization protein | - |
| PFLCHA0_RS06270 (PFLCHA0_c12560) | - | 1413376..1414416 (+) | 1041 | WP_015634366.1 | phage baseplate assembly protein | - |
| PFLCHA0_RS06275 (PFLCHA0_c12570) | - | 1414526..1415032 (+) | 507 | WP_041751983.1 | phage baseplate assembly protein V | - |
| PFLCHA0_RS06280 (PFLCHA0_c12580) | - | 1415035..1415433 (+) | 399 | WP_015634368.1 | phage GP46 family protein | - |
| PFLCHA0_RS06285 (PFLCHA0_c12590) | - | 1415423..1416463 (+) | 1041 | WP_015634369.1 | baseplate J/gp47 family protein | - |
| PFLCHA0_RS06290 (PFLCHA0_c12600) | - | 1416451..1417050 (+) | 600 | WP_011059572.1 | YmfQ family protein | - |
| PFLCHA0_RS06295 (PFLCHA0_c12610) | - | 1417066..1418163 (+) | 1098 | WP_015634370.1 | phage tail protein | - |
| PFLCHA0_RS31635 | - | 1418160..1418537 (+) | 378 | WP_041116261.1 | phage tail assembly chaperone | - |
| PFLCHA0_RS06305 (PFLCHA0_c12620) | - | 1418588..1419151 (+) | 564 | WP_015634371.1 | glycoside hydrolase family 19 protein | - |
| PFLCHA0_RS06310 (PFLCHA0_c12630) | - | 1419260..1419775 (+) | 516 | WP_015634372.1 | hypothetical protein | - |
| PFLCHA0_RS06315 | - | 1420045..1420686 (+) | 642 | WP_041116265.1 | hypothetical protein | - |
| PFLCHA0_RS06320 (PFLCHA0_c12650) | - | 1420856..1421356 (+) | 501 | WP_011059578.1 | CinA family protein | - |
| PFLCHA0_RS06325 (PFLCHA0_c12660) | recA | 1421440..1422492 (+) | 1053 | WP_011059579.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37462.95 Da Isoelectric Point: 5.5108
>NTDB_id=58785 PFLCHA0_RS06325 WP_011059579.1 1421440..1422492(+) (recA) [Pseudomonas protegens CHA0]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=58785 PFLCHA0_RS06325 WP_011059579.1 1421440..1422492(+) (recA) [Pseudomonas protegens CHA0]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCAACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGTTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCAACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGTTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.