Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KW115_RS09900 Genome accession   NZ_CP079095
Coordinates   2001894..2002937 (+) Length   347 a.a.
NCBI ID   WP_218805606.1    Uniprot ID   -
Organism   Methylococcus sp. Mc7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996894..2007937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW115_RS09870 (KW115_09870) - 1996983..1998026 (+) 1044 WP_255556697.1 IS110 family transposase -
  KW115_RS09875 (KW115_09875) - 1998248..1998616 (-) 369 WP_218808909.1 cupin domain-containing protein -
  KW115_RS09880 (KW115_09880) - 1998741..1999604 (-) 864 WP_218808910.1 AraC family transcriptional regulator -
  KW115_RS09885 (KW115_09885) - 1999926..2000630 (+) 705 WP_218808911.1 hypothetical protein -
  KW115_RS09890 (KW115_09890) - 2000826..2001308 (+) 483 WP_218809041.1 CinA family protein -
  KW115_RS09895 (KW115_09895) thpR 2001286..2001861 (+) 576 WP_218808912.1 RNA 2',3'-cyclic phosphodiesterase -
  KW115_RS09900 (KW115_09900) recA 2001894..2002937 (+) 1044 WP_218805606.1 recombinase RecA Machinery gene
  KW115_RS09905 (KW115_09905) - 2003072..2003404 (+) 333 WP_255556715.1 regulatory protein RecX -
  KW115_RS09910 (KW115_09910) alaS 2003424..2006027 (+) 2604 WP_218805607.1 alanine--tRNA ligase -
  KW115_RS09915 (KW115_09915) - 2006062..2007291 (+) 1230 WP_218805608.1 aspartate kinase -
  KW115_RS09920 (KW115_09920) csrA 2007442..2007636 (+) 195 WP_218805609.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36961.18 Da        Isoelectric Point: 5.5074

>NTDB_id=587633 KW115_RS09900 WP_218805606.1 2001894..2002937(+) (recA) [Methylococcus sp. Mc7]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVVSTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDELLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRVADFEILYGEGVSREGELIDLGVSHDIVQKSGSWYSYGGDRIGQGKDNVRIYLKEHPEVAAAIE
AAVREKALAGFQHSAPAGRAAVEESGF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=587633 KW115_RS09900 WP_218805606.1 2001894..2002937(+) (recA) [Methylococcus sp. Mc7]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTTTCCCAGATCGAGAAACAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGATGTCGCGGCGGTCCGGGACATCGATGTGGTGTCCACCGGCTCGCTGGCGCTGGACATCGCGTTGGGCTGCG
GCGGTTTGCCGCGCGGCCGCATCGTCGAGATTTACGGCCCGGAATCCTCGGGCAAGACCACGTTGACCCTGGAGGTCATC
GCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCGTTCGTGGACGCGGAGCATGCGCTGGACCCGGTCTACGCCGAAAAGAT
CGGGGTGAACCTCGACGAGCTCCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGC
GTTCCGGCGGCGTGGACGTGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCCCACATGGGCCTGCAGGCCCGGCTGATGTCGCAGGCTTTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAATAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGTTCGGGCGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCCCCGCCGTTCCGCGTCGCCGATTTCGAGATTCTGTACGGCGAGGG
CGTCTCGCGAGAGGGCGAGCTGATCGACCTCGGCGTGAGTCACGACATCGTGCAGAAGTCCGGCTCCTGGTACAGCTACG
GCGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCGGAGGTTGCGGCCGCCATCGAG
GCGGCCGTCCGCGAGAAGGCGCTGGCCGGGTTTCAGCACTCGGCGCCTGCCGGGCGCGCGGCGGTGGAAGAGAGCGGGTT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

94.524

0.709
  recA Vibrio cholerae strain A1552

75

94.524

0.709
  recA Pseudomonas stutzeri DSM 10701

74.695

94.524

0.706
  recA Acinetobacter baylyi ADP1

74.695

94.524

0.706
  recA Neisseria gonorrhoeae MS11

71.893

97.406

0.7
  recA Neisseria gonorrhoeae MS11

71.893

97.406

0.7
  recA Neisseria gonorrhoeae strain FA1090

71.893

97.406

0.7
  recA Acinetobacter baumannii D1279779

73.252

94.813

0.695
  recA Ralstonia pseudosolanacearum GMI1000

76.452

89.337

0.683
  recA Glaesserella parasuis strain SC1401

72.36

92.795

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.066

95.965

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

92.795

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.538

93.66

0.614
  recA Streptococcus pyogenes NZ131

62.805

94.524

0.594
  recA Helicobacter pylori strain NCTC11637

63.19

93.948

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

63.665

92.795

0.591
  recA Streptococcus pneumoniae Rx1

62.883

93.948

0.591
  recA Streptococcus pneumoniae D39

62.883

93.948

0.591
  recA Streptococcus pneumoniae R6

62.883

93.948

0.591
  recA Streptococcus pneumoniae TIGR4

62.883

93.948

0.591
  recA Helicobacter pylori 26695

62.883

93.948

0.591
  recA Streptococcus mitis SK321

62.963

93.372

0.588
  recA Streptococcus mitis NCTC 12261

62.346

93.372

0.582
  recA Streptococcus mutans UA159

61.963

93.948

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.725

95.389

0.579
  recA Lactococcus lactis subsp. cremoris KW2

61.42

93.372

0.573