Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KVF90_RS13310 Genome accession   NZ_CP078091
Coordinates   2782095..2783162 (-) Length   355 a.a.
NCBI ID   WP_264392059.1    Uniprot ID   -
Organism   Porphyrobacter sp. ULC335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2777095..2788162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVF90_RS13300 (KVF90_13215) - 2777351..2779123 (+) 1773 WP_264392057.1 cation:proton antiporter -
  KVF90_RS13305 (KVF90_13220) alaS 2779136..2781805 (-) 2670 WP_264392058.1 alanine--tRNA ligase -
  KVF90_RS13310 (KVF90_13225) recA 2782095..2783162 (-) 1068 WP_264392059.1 recombinase RecA Machinery gene
  KVF90_RS13315 (KVF90_13230) - 2783307..2784959 (-) 1653 WP_264392060.1 DUF4139 domain-containing protein -
  KVF90_RS13320 (KVF90_13235) - 2784968..2786464 (-) 1497 WP_264392061.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38279.81 Da        Isoelectric Point: 5.3473

>NTDB_id=586669 KVF90_RS13310 WP_264392059.1 2782095..2783162(-) (recA) [Porphyrobacter sp. ULC335]
MATQLKLVEEDKKAVDRQKALEAALAQIDRAFGKGSAMKLGSKETMQVESISTGSLGLDIALGIGGLPRGRVIEVYGPES
SGKTTLALHVIAEAQKMGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAAL
VPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTG
QIKDRDEITGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEIIDLGVKAGLVEKSGSWFSYDSIRIGQGRENAKTYL
KEHPEVCDRLEAAIRSRTDQVAGEMMAGPDADSDD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=586669 KVF90_RS13310 WP_264392059.1 2782095..2783162(-) (recA) [Porphyrobacter sp. ULC335]
ATGGCTACCCAATTGAAATTGGTGGAAGAGGACAAAAAAGCCGTGGACCGTCAAAAGGCTCTCGAAGCCGCGCTCGCACA
GATTGATCGTGCATTCGGCAAGGGTTCGGCAATGAAGCTGGGCTCGAAGGAAACGATGCAGGTCGAATCCATTTCGACCG
GTTCGCTGGGTCTGGATATTGCTCTGGGCATCGGCGGCCTGCCGCGCGGCCGGGTGATCGAAGTCTACGGGCCGGAAAGC
TCGGGCAAGACCACGCTGGCGCTGCATGTTATTGCCGAAGCGCAAAAGATGGGCGGCACTGCTGCCTTCGTCGACGCGGA
ACACGCGCTTGATCCGGTCTATGCCAAGAAGCTGGGCGTCGACATTGACGAATTGATCGTCTCGCAGCCCGATACCGGCG
AACAGGCGCTGGAAATCGTCGATACGCTGGTGCGTTCCAACGCGATTGACGTGCTGGTGGTCGATTCGGTCGCAGCGCTG
GTGCCGCGCGCGGAAATCGAAGGCGAGATGGGCGATTCGCACGTCGGCCTTCAGGCCCGCCTGATGAGCCAGAGCTTGCG
CAAGCTGACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGTGTGATGT
ACGGTAACCCCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATGCCTCGGTCCGTCTCGACATCCGCCGCACCGGA
CAGATCAAGGACCGTGACGAGATTACCGGCAACGCAACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCGTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGCATCTCCAAGATCGGCGAGATCATCGATCTGGGTGTGAAGGCCGGCC
TCGTCGAGAAGTCGGGGAGCTGGTTCTCCTACGATTCGATCCGCATCGGTCAGGGCCGCGAAAACGCCAAGACCTATCTC
AAGGAACATCCTGAAGTTTGCGACCGGTTGGAAGCTGCGATCCGCAGCCGCACCGATCAGGTTGCCGGGGAAATGATGGC
CGGGCCGGACGCGGACTCGGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

65.722

99.437

0.654
  recA Pseudomonas stutzeri DSM 10701

68.249

94.93

0.648
  recA Vibrio cholerae strain A1552

67.463

94.366

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.463

94.366

0.637
  recA Neisseria gonorrhoeae MS11

69.255

90.704

0.628
  recA Neisseria gonorrhoeae MS11

69.255

90.704

0.628
  recA Neisseria gonorrhoeae strain FA1090

69.255

90.704

0.628
  recA Acinetobacter baylyi ADP1

65.075

94.366

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

67.812

90.141

0.611
  recA Acinetobacter baumannii D1279779

66.46

90.704

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

92.394

0.603
  recA Ralstonia pseudosolanacearum GMI1000

69.156

86.761

0.6
  recA Helicobacter pylori 26695

63.393

94.648

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.839

90.704

0.597
  recA Helicobacter pylori strain NCTC11637

63.095

94.648

0.597
  recA Streptococcus pneumoniae D39

58.774

100

0.594
  recA Streptococcus pneumoniae R6

58.774

100

0.594
  recA Streptococcus pneumoniae TIGR4

58.774

100

0.594
  recA Streptococcus pneumoniae Rx1

58.774

100

0.594
  recA Streptococcus mitis NCTC 12261

58.357

99.437

0.58
  recA Streptococcus mitis SK321

58.357

99.437

0.58
  recA Streptococcus pyogenes NZ131

59.767

96.62

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

63.863

90.423

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.585

92.394

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.309

96.62

0.563
  recA Streptococcus mutans UA159

58.065

96.056

0.558