Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KTR69_RS09085 Genome accession   NZ_CP077960
Coordinates   1808242..1809246 (-) Length   334 a.a.
NCBI ID   WP_370688588.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain WHA07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803242..1814246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR69_RS09070 - 1803924..1804757 (+) 834 WP_058611057.1 alpha/beta fold hydrolase -
  KTR69_RS09075 - 1805043..1806278 (-) 1236 WP_218696601.1 Fic family protein -
  KTR69_RS09080 rny 1806456..1808015 (-) 1560 WP_037587823.1 ribonuclease Y -
  KTR69_RS09085 recA 1808242..1809246 (-) 1005 WP_370688588.1 recombinase RecA Machinery gene
  KTR69_RS09090 - 1809456..1810604 (-) 1149 WP_096791364.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  KTR69_RS09095 pgsA 1810662..1811243 (-) 582 WP_037587820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KTR69_RS09100 - 1811308..1811703 (-) 396 WP_058611059.1 RodZ family helix-turn-helix domain-containing protein -
  KTR69_RS09105 - 1811724..1812539 (-) 816 WP_025905363.1 YmfK family protein -
  KTR69_RS09110 ymfI 1812556..1813260 (-) 705 WP_065381123.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36191.04 Da        Isoelectric Point: 5.2127

>NTDB_id=585708 KTR69_RS09085 WP_370688588.1 1808242..1809246(-) (recA) [Mammaliicoccus sciuri strain WHA07]
MEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEAQRQGGVAAFIDAE
HALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALR
KLSGAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKIKVVKNKVAPPFR
VAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDGILRDQLGFNGKKKEE
AKKEEKPNEPEQET

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=585708 KTR69_RS09085 WP_370688588.1 1808242..1809246(-) (recA) [Mammaliicoccus sciuri strain WHA07]
ATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCTAGGGGATAATACAAGTAGAGAAGTATCAGCAGTTTCTAGTGG
CTCAATCACACTTGATAAAGCATTAGGTGTTGGTGGTTACCCTAAAGGACGTATCATTGAAATATATGGTCCAGAAAGTT
CTGGTAAAACAACAGTAGCTTTACACGCTATCGCTGAAGCACAAAGACAAGGTGGCGTAGCTGCTTTTATTGATGCTGAG
CACGCACTAGATCCTGTTTATGCTAAAAACTTAGGCGTAGATATTGATAACCTATATTTATCACAACCAGACCATGGTGA
ACAAGGTTTAGAGATTGCAGAAGCATTTGTTCGTAGTGGTGCAGTTGATATTGTTATTGTTGACTCAGTAGCAGCATTAA
CACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACACACGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGT
AAATTATCAGGTGCTATTTCTAAATCAAATACAACAGCTATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTT
CGGTAATCCTGAAGTTACACCAGGTGGACGTGCGTTGAAGTTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAAC
AATTGAAACAAGGTCAAGAAGTTGTTGGTAACCGTACTAAAATTAAAGTTGTTAAAAACAAAGTTGCGCCTCCATTCAGA
GTAGCAGAAGTTGATATTATGTATGGTGAAGGTATTTCACGTGAAGGTGAATTAATCGACTTAGCAGTTGAATTTGATAT
TGTAGATAAATCAGGTGCTTGGTATTCATATAACGGAGAACGTATGGGTCAAGGTAAAGAAAACGTTAAGACTTACCTAA
AAGAAAACCCAGCTATTATTGAAGAAATTGATGGAATCTTAAGAGATCAATTAGGCTTTAACGGTAAGAAGAAAGAAGAA
GCTAAAAAAGAAGAAAAACCTAATGAGCCTGAACAAGAAACTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.389

94.012

0.728
  recA Latilactobacillus sakei subsp. sakei 23K

69.846

97.305

0.68
  recA Streptococcus mutans UA159

65.68

100

0.665
  recA Streptococcus pneumoniae Rx1

65.089

100

0.659
  recA Streptococcus pneumoniae TIGR4

65.089

100

0.659
  recA Streptococcus pneumoniae R6

65.089

100

0.659
  recA Streptococcus pneumoniae D39

65.089

100

0.659
  recA Streptococcus mitis NCTC 12261

66.364

98.802

0.656
  recA Streptococcus mitis SK321

66.061

98.802

0.653
  recA Acinetobacter baumannii D1279779

65.861

99.102

0.653
  recA Streptococcus pyogenes NZ131

68.354

94.611

0.647
  recA Acinetobacter baylyi ADP1

64.955

99.102

0.644
  recA Neisseria gonorrhoeae MS11

63.964

99.701

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.964

99.701

0.638
  recA Neisseria gonorrhoeae MS11

63.964

99.701

0.638
  recA Lactococcus lactis subsp. cremoris KW2

66.562

94.91

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.456

94.611

0.629
  recA Helicobacter pylori strain NCTC11637

62.874

100

0.629
  recA Helicobacter pylori 26695

62.575

100

0.626
  recA Vibrio cholerae strain A1552

66.238

93.114

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.238

93.114

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.65

94.012

0.608
  recA Glaesserella parasuis strain SC1401

60.661

99.701

0.605
  recA Pseudomonas stutzeri DSM 10701

64.63

93.114

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.83

94.91

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.171

91.018

0.566