Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLOPA_RS12300 Genome accession   NC_021182
Coordinates   2617761..2618822 (+) Length   353 a.a.
NCBI ID   WP_015615761.1    Uniprot ID   R4K2X6
Organism   Clostridium pasteurianum BC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612761..2623822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOPA_RS12285 (Clopa_2601) - 2613038..2615272 (+) 2235 WP_015615758.1 DNA translocase FtsK -
  CLOPA_RS12290 (Clopa_2602) rimO 2615528..2616868 (+) 1341 WP_015615759.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CLOPA_RS12295 (Clopa_2603) pgsA 2616855..2617439 (+) 585 WP_015615760.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CLOPA_RS12300 (Clopa_2604) recA 2617761..2618822 (+) 1062 WP_015615761.1 recombinase RecA Machinery gene
  CLOPA_RS12305 (Clopa_2605) rny 2619116..2620660 (+) 1545 WP_015615762.1 ribonuclease Y -
  CLOPA_RS12310 (Clopa_2606) - 2620831..2621091 (+) 261 WP_015615763.1 stage V sporulation protein S -
  CLOPA_RS12315 (Clopa_2607) - 2621293..2622165 (+) 873 WP_015615764.1 decaprenyl-phosphate phosphoribosyltransferase -
  CLOPA_RS12320 (Clopa_2608) - 2622524..2623720 (+) 1197 WP_015615765.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38504.97 Da        Isoelectric Point: 5.2487

>NTDB_id=58556 CLOPA_RS12300 WP_015615761.1 2617761..2618822(+) (recA) [Clostridium pasteurianum BC1]
MDNEKFKALEAALGQIEKQFGKGSIMKLGEHSVLDVDSISTGCLSLDIALGIGGVPRGRVVEIYGPESSGKTTVALHVIA
EAQKSEGTAAFIDAEHALDPAYARRLGVDTENLIVSQPDTGEQALEIAEALVRSNAIDVIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLAGAINKSKCVVIFINQLREKVGVMFGSPETTPGGRALKFYASVRMDIRRIDSIKQGDEIIGNR
TRVKVIKNKIAPPFKQAEFDIMYNEGISKEGNIVDVGVKEEIIQKSGAWFSYGEVRLGQGRENAKQYLKENPDIEIEIET
KIREKNELPIKKSNSDTDDTDEKLEKDKKLSKA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=58556 CLOPA_RS12300 WP_015615761.1 2617761..2618822(+) (recA) [Clostridium pasteurianum BC1]
ATGGATAATGAAAAATTTAAAGCACTAGAAGCTGCCTTAGGACAAATTGAAAAACAATTTGGTAAGGGCTCTATTATGAA
ACTTGGAGAACATAGTGTATTGGATGTAGATTCAATATCAACAGGTTGTTTATCTTTAGATATAGCATTGGGAATAGGTG
GAGTGCCAAGAGGGAGAGTTGTAGAAATATATGGACCTGAATCCTCTGGTAAAACTACAGTAGCCCTTCATGTTATAGCA
GAAGCTCAAAAATCAGAAGGTACTGCTGCTTTTATTGATGCTGAACATGCCTTAGATCCTGCTTATGCAAGAAGGCTTGG
AGTTGATACGGAAAATTTAATAGTTTCACAGCCAGATACTGGAGAGCAAGCTCTAGAAATAGCTGAAGCCCTTGTAAGGT
CTAATGCAATAGATGTAATAGTAGTGGATTCTGTTGCTGCTTTAGTTCCTAAAGCTGAAATAGAAGGTGAAATGGGAGAT
TCACATGTTGGTCTTCAGGCAAGACTTATGTCTCAAGCCCTTAGAAAGCTTGCAGGAGCTATAAATAAATCAAAATGTGT
AGTTATATTTATAAATCAATTAAGAGAAAAAGTCGGAGTTATGTTTGGAAGTCCAGAGACAACTCCCGGTGGAAGAGCTT
TAAAATTCTATGCTTCCGTGAGAATGGACATTAGAAGAATAGATTCTATAAAGCAGGGTGATGAAATAATTGGTAATAGA
ACTAGAGTAAAGGTAATAAAAAATAAAATAGCTCCTCCATTTAAGCAAGCTGAATTTGATATAATGTATAATGAAGGAAT
TTCAAAAGAAGGAAATATTGTTGACGTTGGAGTTAAAGAAGAAATAATTCAAAAAAGCGGTGCCTGGTTCTCCTATGGAG
AAGTAAGACTTGGTCAAGGTAGAGAAAATGCTAAACAGTATTTAAAAGAAAATCCGGATATAGAAATTGAAATAGAAACT
AAAATAAGAGAAAAAAATGAGTTGCCTATAAAAAAATCAAATTCTGATACTGATGATACGGATGAAAAGTTAGAAAAGGA
TAAAAAATTATCTAAAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4K2X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.963

90.935

0.654
  recA Acinetobacter baylyi ADP1

65.306

97.167

0.635
  recA Pseudomonas stutzeri DSM 10701

65.116

97.45

0.635
  recA Neisseria gonorrhoeae MS11

65.205

96.884

0.632
  recA Neisseria gonorrhoeae MS11

65.205

96.884

0.632
  recA Neisseria gonorrhoeae strain FA1090

65.205

96.884

0.632
  recA Vibrio cholerae strain A1552

63.873

98.017

0.626
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.873

98.017

0.626
  recA Glaesserella parasuis strain SC1401

64.62

96.884

0.626
  recA Acinetobacter baumannii D1279779

67.385

92.068

0.62
  recA Helicobacter pylori 26695

66.462

92.068

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.152

93.484

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

97.167

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

90.935

0.606
  recA Streptococcus pneumoniae D39

61.143

99.15

0.606
  recA Streptococcus pneumoniae TIGR4

61.143

99.15

0.606
  recA Streptococcus pneumoniae R6

61.143

99.15

0.606
  recA Streptococcus pneumoniae Rx1

61.143

99.15

0.606
  recA Helicobacter pylori strain NCTC11637

65.846

92.068

0.606
  recA Ralstonia pseudosolanacearum GMI1000

68.608

87.535

0.601
  recA Streptococcus mutans UA159

59.605

100

0.598
  recA Lactococcus lactis subsp. cremoris KW2

63.526

93.201

0.592
  recA Streptococcus pyogenes NZ131

63.609

92.635

0.589
  recA Streptococcus mitis NCTC 12261

63.889

91.785

0.586
  recA Streptococcus mitis SK321

63.58

91.785

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

90.652

0.552

Multiple sequence alignment