Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KS242_RS08345 Genome accession   NZ_CP077639
Coordinates   1563701..1564732 (+) Length   343 a.a.
NCBI ID   WP_217323892.1    Uniprot ID   -
Organism   Terribacillus sp. DMT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558701..1569732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS242_RS08320 (KS242_08320) - 1559493..1559753 (+) 261 WP_217323887.1 DUF3243 domain-containing protein -
  KS242_RS08325 (KS242_08325) - 1559915..1560670 (+) 756 WP_217323888.1 DUF3388 domain-containing protein -
  KS242_RS08330 (KS242_08330) - 1560699..1561613 (+) 915 WP_217323889.1 helix-turn-helix domain-containing protein -
  KS242_RS08335 (KS242_08335) pgsA 1561689..1562267 (+) 579 WP_217323890.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KS242_RS08340 (KS242_08340) - 1562269..1563525 (+) 1257 WP_217323891.1 competence/damage-inducible protein A -
  KS242_RS08345 (KS242_08345) recA 1563701..1564732 (+) 1032 WP_217323892.1 recombinase RecA Machinery gene
  KS242_RS08350 (KS242_08350) rny 1565131..1566693 (+) 1563 WP_077309441.1 ribonuclease Y -
  KS242_RS08355 (KS242_08355) - 1566771..1567568 (+) 798 WP_217323893.1 TIGR00282 family metallophosphoesterase -
  KS242_RS08360 (KS242_08360) - 1567725..1567985 (+) 261 WP_058307744.1 stage V sporulation protein S -
  KS242_RS08365 (KS242_08365) miaB 1568088..1569650 (+) 1563 WP_371747614.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37385.51 Da        Isoelectric Point: 5.2022

>NTDB_id=581813 KS242_RS08345 WP_217323892.1 1563701..1564732(+) (recA) [Terribacillus sp. DMT04]
MSERKQALDMALRQIEKQFGKGSIMKLGERAEQKVSTVSSGSLALDIALGVGGYPKGRVVEIYGPESSGKTTVALHAIAE
AQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGELIDIASDLDIVQKSGAWYSYNDERLGQGRENAKQFMKENPEIATTIQMQ
VREHYNLDADKKLPDEEQESLDM

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=581813 KS242_RS08345 WP_217323892.1 1563701..1564732(+) (recA) [Terribacillus sp. DMT04]
TTGAGTGAACGTAAACAAGCCCTTGATATGGCTTTGAGACAAATAGAGAAACAGTTCGGTAAAGGTTCCATTATGAAACT
CGGTGAAAGAGCAGAACAGAAGGTCTCTACCGTATCCAGCGGCTCCCTTGCTCTCGACATCGCCCTTGGTGTCGGCGGCT
ATCCAAAAGGCCGTGTTGTAGAAATCTACGGTCCGGAATCCTCTGGTAAAACAACTGTTGCACTGCATGCAATTGCAGAA
GCACAGCGTAACGGCGGACAAGCGGCTTTCATTGATGCAGAGCATGCGCTTGATCCTGTTTATGCACAAAAACTAGGTGT
TAATATAGATGAACTTTTACTTTCCCAGCCGGATACAGGGGAACAAGCATTAGAAATCGCAGAAGCCCTCGTACGAAGCG
GTGCAGTTGATATTGTTGTTGTCGACTCTGTAGCTGCCCTTGTACCGAAAGCTGAAATCGAAGGGGAGATGGGTGACTCC
CACGTCGGTCTTCAAGCACGTCTAATGTCCCAGGCTTTACGTAAATTGTCTGGTGCAATCAACAAATCAAAAACAACTGC
CATCTTTATCAACCAGATTCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACAACTCCCGGCGGCCGTGCGCTTA
AATTCTATTCTTCTGTCCGTCTAGAAGTACGCCGTGCAGAGACGCTCAAGCAAGGTAATGATATGGTAGGTAATAAAACT
AGAATTAAAGTTGTGAAAAACAAGGTTGCACCTCCGTTTAAACAAGCGGAAGTAGACATAATGTACGGAGAAGGTATTTC
CCGTGAAGGGGAACTTATCGATATAGCCAGTGACTTGGACATCGTTCAAAAAAGTGGAGCTTGGTATTCTTATAACGATG
AGCGCCTAGGGCAAGGCCGTGAGAATGCGAAGCAATTCATGAAAGAAAATCCGGAAATAGCTACAACAATTCAGATGCAA
GTACGTGAGCACTATAATCTGGATGCAGATAAGAAACTTCCGGATGAAGAACAAGAATCACTGGATATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

95.627

0.819
  recA Latilactobacillus sakei subsp. sakei 23K

72.595

100

0.726
  recA Streptococcus mutans UA159

74.164

95.918

0.711
  recA Streptococcus mitis NCTC 12261

73.333

96.21

0.706
  recA Streptococcus pneumoniae Rx1

73.333

96.21

0.706
  recA Streptococcus pneumoniae D39

73.333

96.21

0.706
  recA Streptococcus pneumoniae R6

73.333

96.21

0.706
  recA Streptococcus pneumoniae TIGR4

73.333

96.21

0.706
  recA Streptococcus mitis SK321

73.03

96.21

0.703
  recA Streptococcus pyogenes NZ131

72.477

95.335

0.691
  recA Lactococcus lactis subsp. cremoris KW2

70

96.21

0.673
  recA Vibrio cholerae strain A1552

68.827

94.461

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.827

94.461

0.65
  recA Acinetobacter baumannii D1279779

62.029

100

0.624
  recA Neisseria gonorrhoeae MS11

68.387

90.379

0.618
  recA Neisseria gonorrhoeae MS11

68.387

90.379

0.618
  recA Neisseria gonorrhoeae strain FA1090

68.387

90.379

0.618
  recA Acinetobacter baylyi ADP1

61.696

99.708

0.615
  recA Ralstonia pseudosolanacearum GMI1000

67.412

91.254

0.615
  recA Pseudomonas stutzeri DSM 10701

65.517

93.003

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

95.335

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

95.335

0.609
  recA Glaesserella parasuis strain SC1401

65

93.294

0.606
  recA Helicobacter pylori 26695

60.526

99.708

0.603
  recA Helicobacter pylori strain NCTC11637

60.526

99.708

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.75

93.294

0.595