Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KGD87_RS33960 Genome accession   NZ_CP077414
Coordinates   8315827..8316858 (-) Length   343 a.a.
NCBI ID   WP_284665073.1    Uniprot ID   -
Organism   Myxococcus sp. SDU36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8310827..8321858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD87_RS33940 (KGD87_33810) pssA 8311555..8312421 (+) 867 WP_284665069.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  KGD87_RS33945 (KGD87_33815) - 8312511..8313776 (+) 1266 WP_284665070.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  KGD87_RS33950 (KGD87_33820) - 8313773..8315263 (+) 1491 WP_284665071.1 hypothetical protein -
  KGD87_RS33955 (KGD87_33825) - 8315321..8315830 (+) 510 WP_284665072.1 DUF1285 domain-containing protein -
  KGD87_RS33960 (KGD87_33830) recA 8315827..8316858 (-) 1032 WP_284665073.1 recombinase RecA Machinery gene
  KGD87_RS33965 (KGD87_33835) - 8317153..8318532 (+) 1380 WP_284665074.1 NAD(P)/FAD-dependent oxidoreductase -
  KGD87_RS33970 (KGD87_33840) - 8318556..8320199 (-) 1644 WP_284665075.1 YifB family Mg chelatase-like AAA ATPase -
  KGD87_RS33975 (KGD87_33845) - 8320397..8321071 (+) 675 WP_350100706.1 hypothetical protein -
  KGD87_RS33980 (KGD87_33850) - 8320972..8321595 (-) 624 WP_284665077.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36082.39 Da        Isoelectric Point: 7.5189

>NTDB_id=581419 KGD87_RS33960 WP_284665073.1 8315827..8316858(-) (recA) [Myxococcus sp. SDU36]
MSKLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAREQKVAVIPSGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQPDTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVV
GSKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSHFSLRGERIGQGRERAAEWLREHPDVLEA
LGKELTGTSALPSPPAPAEVAAA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=581419 KGD87_RS33960 WP_284665073.1 8315827..8316858(-) (recA) [Myxococcus sp. SDU36]
ATGAGCAAGCTGGCGGAGAAGCTGAAGGCGGTGGCGGCGGCGGTGGCGAGCATTGAGAAGCAGTTCGGACGAGGCTCGGT
GATGACGTTGGGCGGAGAGGCGCGCGAACAGAAGGTGGCCGTCATCCCCTCCGGCTCGGTGGGAGTGGACCGCGCGCTGG
GCGTGGGCGGCTACCCGCGGGGCCGTGTGGTGGAGGTCTTCGGGAACGAGTCCTCGGGCAAGACGACGCTCACCCTCCAT
GCGATTGCCCAGGTGCAGGCGGCGGGAGGCGTGGCGGCCTTCATCGACGCGGAGCACGCATTGGACGTGTCCTACGCGCG
AAAGCTGGGCGTCCGCGTGGAGGAGCTGCTCGTATCGCAGCCCGACACCGGCGAACAGGCGCTGGAAATCACGGAGCACC
TGGTGCGCTCCGGCGCGGTGGACCTCATCGTCGTCGACTCCGTGGCGGCCCTGGTGCCACGGGCCGAAATCGAAGGGGAG
ATGGGGGACGCGCACATGGGCGTCCAGGCGAGGCTGATGAGTCAGGCGCTGCGCAAGTTGACGGGCGCGGTGAGCCGGTC
GGGCACGTGCATCATCTTCATCAACCAGATTCGCATGAAGATTGGCGTGATGTTCGGCAATCCGGAGACCACCACCGGCG
GCAATGCGCTGAAGTTCTACGCCTCCGTGCGCATGGAGATTCGCCGCACGGGCAACATCAAGGACGGAGACGCCGTGGTG
GGCTCGAAGGCGCGAGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCCGAGTTCGACCTCATGTACGG
CAGCGGCATCCACCGCGTGGGGGAAGTGCTCGACCTCGGCGTGGCCACGGGCCTCATCGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGAGAGCGCATCGGCCAGGGCCGGGAGCGCGCCGCCGAGTGGCTGCGCGAACACCCCGACGTGCTGGAAGCG
CTGGGCAAGGAGCTCACGGGGACCTCCGCCCTGCCCTCCCCGCCTGCACCAGCGGAGGTCGCGGCCGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.01

91.254

0.63
  recA Pseudomonas stutzeri DSM 10701

66.667

90.962

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.577

93.003

0.601
  recA Vibrio cholerae strain A1552

64.577

93.003

0.601
  recA Glaesserella parasuis strain SC1401

62.424

96.21

0.601
  recA Acinetobacter baylyi ADP1

62.08

95.335

0.592
  recA Neisseria gonorrhoeae strain FA1090

64.241

92.128

0.592
  recA Neisseria gonorrhoeae MS11

64.241

92.128

0.592
  recA Neisseria gonorrhoeae MS11

64.241

92.128

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.127

91.837

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.371

93.586

0.574
  recA Acinetobacter baumannii D1279779

61.442

93.003

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

90.962

0.569
  recA Helicobacter pylori 26695

56.105

100

0.563
  recA Helicobacter pylori strain NCTC11637

56.105

100

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

94.169

0.56
  recA Streptococcus pneumoniae Rx1

58.154

94.752

0.551
  recA Streptococcus pneumoniae D39

58.154

94.752

0.551
  recA Streptococcus pneumoniae R6

58.154

94.752

0.551
  recA Streptococcus pneumoniae TIGR4

58.154

94.752

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.567

93.586

0.548
  recA Streptococcus mitis SK321

58.491

92.711

0.542
  recA Streptococcus pyogenes NZ131

57.407

94.461

0.542
  recA Streptococcus mitis NCTC 12261

57.632

93.586

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.786

91.254

0.536
  recA Streptococcus mutans UA159

57.188

93.294

0.534