Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KGD87_RS33640 Genome accession   NZ_CP077414
Coordinates   8233443..8234537 (+) Length   364 a.a.
NCBI ID   WP_284665021.1    Uniprot ID   -
Organism   Myxococcus sp. SDU36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8228443..8239537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD87_RS33610 (KGD87_33480) glmS 8228726..8230561 (+) 1836 WP_284665015.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  KGD87_RS33615 (KGD87_33485) - 8230648..8230902 (-) 255 WP_284665016.1 hypothetical protein -
  KGD87_RS33620 (KGD87_33490) - 8230899..8231396 (-) 498 WP_284665017.1 DUF3106 domain-containing protein -
  KGD87_RS33625 (KGD87_33495) - 8231393..8231869 (-) 477 WP_284665018.1 zf-HC2 domain-containing protein -
  KGD87_RS33630 (KGD87_33500) - 8231866..8232459 (-) 594 WP_284665019.1 RNA polymerase sigma factor -
  KGD87_RS33635 (KGD87_33505) - 8232527..8233330 (+) 804 WP_284665020.1 hypothetical protein -
  KGD87_RS33640 (KGD87_33510) recA 8233443..8234537 (+) 1095 WP_284665021.1 recombinase RecA Machinery gene
  KGD87_RS33645 (KGD87_33515) - 8234701..8236926 (+) 2226 WP_284668727.1 alkaline phosphatase D family protein -
  KGD87_RS33650 (KGD87_33520) - 8237083..8237961 (+) 879 WP_284665022.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39175.97 Da        Isoelectric Point: 6.8712

>NTDB_id=581418 KGD87_RS33640 WP_284665021.1 8233443..8234537(+) (recA) [Myxococcus sp. SDU36]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYSRKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGRENVKEYLREHPEIAK
DIEGRVLEKYGIGKTGAAPVAAVPDESAPLEGGSEKRGRVKAVK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=581418 KGD87_RS33640 WP_284665021.1 8233443..8234537(+) (recA) [Myxococcus sp. SDU36]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAACTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGCGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTGGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGCAAGACGACGCTGTGTCTC
CACATCGTCGCAGAAGCGCAGAAGCGCGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACTC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATTCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGACAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGGAAGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCCCGTGAGGGCGACCTCATCGACCTCGCCTCCAACGAGAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAACGGTGAGCGCATCGGCCAGGGCCGGGAGAACGTGAAGGAGTACCTGCGCGAGCACCCGGAGATTGCCAAG
GACATCGAAGGCCGCGTGCTGGAGAAGTACGGCATCGGCAAGACGGGTGCCGCGCCCGTCGCCGCGGTGCCGGACGAGTC
CGCGCCGCTCGAAGGTGGCAGCGAGAAGCGCGGCCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.827

89.011

0.613
  recA Pseudomonas stutzeri DSM 10701

64.244

94.505

0.607
  recA Acinetobacter baumannii D1279779

62.536

95.33

0.596
  recA Acinetobacter baylyi ADP1

62.609

94.78

0.593
  recA Vibrio cholerae strain A1552

65.644

89.56

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

89.56

0.588
  recA Helicobacter pylori strain NCTC11637

59.659

96.703

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

60.756

94.505

0.574
  recA Neisseria gonorrhoeae MS11

64.198

89.011

0.571
  recA Neisseria gonorrhoeae MS11

64.198

89.011

0.571
  recA Neisseria gonorrhoeae strain FA1090

64.198

89.011

0.571
  recA Helicobacter pylori 26695

59.091

96.703

0.571
  recA Glaesserella parasuis strain SC1401

64.596

88.462

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.934

90.934

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.963

89.011

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.631

90.934

0.56
  recA Streptococcus pneumoniae R6

61.027

90.934

0.555
  recA Streptococcus pneumoniae TIGR4

61.027

90.934

0.555
  recA Streptococcus pneumoniae Rx1

61.027

90.934

0.555
  recA Streptococcus pneumoniae D39

61.027

90.934

0.555
  recA Streptococcus mitis NCTC 12261

59.819

90.934

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

90.934

0.541
  recA Streptococcus mitis SK321

59.517

90.934

0.541
  recA Streptococcus pyogenes NZ131

59.697

90.659

0.541
  recA Streptococcus mutans UA159

58.61

90.934

0.533
  recA Lactococcus lactis subsp. cremoris KW2

57.704

90.934

0.525