Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6L37_RS06885 Genome accession   NZ_CP077399
Coordinates   1419716..1420780 (+) Length   354 a.a.
NCBI ID   WP_124240182.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414716..1425780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS06870 (I6L37_06870) - 1415419..1416318 (+) 900 WP_216993600.1 hypothetical protein -
  I6L37_RS06875 (I6L37_06875) mutS 1416385..1418967 (-) 2583 WP_216993601.1 DNA mismatch repair protein MutS -
  I6L37_RS06880 (I6L37_06880) pncC 1419145..1419636 (+) 492 WP_026456471.1 nicotinamide-nucleotide amidase -
  I6L37_RS06885 (I6L37_06885) recA 1419716..1420780 (+) 1065 WP_124240182.1 recombinase RecA Machinery gene
  I6L37_RS06890 (I6L37_06890) - 1420823..1421323 (+) 501 WP_216993602.1 regulatory protein RecX -
  I6L37_RS06895 (I6L37_06895) alaS 1421760..1424384 (+) 2625 WP_201941551.1 alanine--tRNA ligase -
  I6L37_RS06900 (I6L37_06900) - 1424401..1425639 (+) 1239 WP_216993603.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37967.57 Da        Isoelectric Point: 4.8233

>NTDB_id=581223 I6L37_RS06885 WP_124240182.1 1419716..1420780(+) (recA) [Aeromonas sp. FDAARGOS 1407]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKAMAAEVEA
KLRELLLSGAVPADDKAVAAEEDEFDVESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=581223 I6L37_RS06885 WP_124240182.1 1419716..1420780(+) (recA) [Aeromonas sp. FDAARGOS 1407]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAACACGCACTCGACCCCATCTATGCTGCCAAGCTGGG
CGTCAACGTCGATGACCTGCTCATCTCCCAGCCGGACACCGGCGAACAGGCGCTCGAGATCTGCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTCATTATCGTCGACTCCGTGGCGGCCTTGACCCCGAAAGCGGAAATCGAGGGCGAGATGGGGGAT
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACTGCCAACATCAAGAATGCCAACTGTCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACAACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGCCTGGATATCCGCCGTACCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTTGCCGAGAACAAGGCCATGGCTGCCGAAGTGGAGGCC
AAGCTGCGCGAGCTGCTGCTCTCCGGTGCTGTCCCTGCCGATGACAAGGCGGTCGCCGCGGAAGAAGACGAGTTCGACGT
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae strain A1552

75.141

100

0.751
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.141

100

0.751
  recA Acinetobacter baumannii D1279779

71.388

99.718

0.712
  recA Glaesserella parasuis strain SC1401

70.255

99.718

0.701
  recA Acinetobacter baylyi ADP1

71.802

97.175

0.698
  recA Ralstonia pseudosolanacearum GMI1000

72.644

92.938

0.675
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae strain FA1090

72.393

92.09

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

93.503

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Helicobacter pylori strain NCTC11637

64

91.808

0.588
  recA Helicobacter pylori 26695

63.385

91.808

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.294

96.045

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.756

92.655

0.554
  recA Streptococcus mutans UA159

60.681

91.243

0.554
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531