Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6L30_RS18860 Genome accession   NZ_CP077365
Coordinates   3995696..3996748 (-) Length   350 a.a.
NCBI ID   WP_004701217.1    Uniprot ID   N8S6Y7
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3990696..4001748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS18825 (I6L30_18825) - 3990931..3991434 (+) 504 WP_191109318.1 OmpH family outer membrane protein -
  I6L30_RS18830 (I6L30_18830) lpxD 3991439..3992509 (+) 1071 WP_216984940.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  I6L30_RS18835 (I6L30_18835) fabZ 3992516..3993001 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6L30_RS18840 (I6L30_18840) lpxA 3992998..3993786 (+) 789 WP_004701211.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I6L30_RS18845 (I6L30_18845) - 3993841..3994731 (-) 891 WP_216984941.1 YbgF trimerization domain-containing protein -
  I6L30_RS18855 (I6L30_18855) - 3995159..3995641 (-) 483 WP_019458742.1 regulatory protein RecX -
  I6L30_RS18860 (I6L30_18860) recA 3995696..3996748 (-) 1053 WP_004701217.1 recombinase RecA Machinery gene
  I6L30_RS18865 (I6L30_18865) - 3996894..3997334 (-) 441 WP_004701218.1 RNA-binding S4 domain-containing protein -
  I6L30_RS18870 (I6L30_18870) - 3997318..3998004 (-) 687 WP_191106228.1 HAD-IA family hydrolase -
  I6L30_RS18875 (I6L30_18875) - 3998421..3998711 (+) 291 WP_004701224.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38047.39 Da        Isoelectric Point: 4.7853

>NTDB_id=580946 I6L30_RS18860 WP_004701217.1 3995696..3996748(-) (recA) [Acinetobacter seifertii strain FDAARGOS 1400]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENKQIAEEIER
NIREQLLTTGTNGAVQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=580946 I6L30_RS18860 WP_004701217.1 3995696..3996748(-) (recA) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAGCAATTTGGCAAAAATACGGTTATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATCGCC
CAATGTCAAAAGTCTGGTGGTACATGTGCCTTCATCGATGCCGAACATGCCCTAGATCCTCAATATGCACGTAAACTTGG
TGTTGATATTGACAACCTACTTGTTTCACAACCTGATAATGGTGAACAAGCACTTGAAATCGCCGATATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCCCTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAT
TCTCACATGGGTCTACAAGCTCGTCTTATGAGCCAAGCGCTTCGTAAAATTACGGGTAACGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACGGGTGGTAACGCTC
TTAAGTTCTATGCGTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGCAC
TAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACGTGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAACGC
AATATTCGAGAGCAATTGCTGACCACAGGTACAAATGGCGCAGTACAAGTTGAAGATGACGAAGAAGAGCCAGATCTATT
ATTAGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8S6Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.857

100

0.989
  recA Acinetobacter baylyi ADP1

92.795

99.143

0.92
  recA Pseudomonas stutzeri DSM 10701

73.775

99.143

0.731
  recA Vibrio cholerae strain A1552

73.394

93.429

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686
  recA Glaesserella parasuis strain SC1401

71.914

92.571

0.666
  recA Ralstonia pseudosolanacearum GMI1000

70.732

93.714

0.663
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae strain FA1090

65.812

100

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62
  recA Helicobacter pylori strain NCTC11637

63.158

97.714

0.617
  recA Helicobacter pylori 26695

62.865

97.714

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

94.571

0.6
  recA Streptococcus pneumoniae R6

59.827

98.857

0.591
  recA Streptococcus pneumoniae D39

59.827

98.857

0.591
  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591
  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.143

0.583
  recA Streptococcus mitis SK321

59.531

97.429

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58
  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574
  recA Streptococcus mitis NCTC 12261

61.656

93.143

0.574
  recA Streptococcus mutans UA159

61.28

93.714

0.574
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534