Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6L45_RS03955 Genome accession   NZ_CP077363
Coordinates   826899..827963 (-) Length   354 a.a.
NCBI ID   WP_043757404.1    Uniprot ID   A0A0K0MKG5
Organism   Aeromonas sp. FDAARGOS 1415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821899..832963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L45_RS03935 (I6L45_03935) csrA 821916..822104 (-) 189 WP_005315760.1 carbon storage regulator CsrA -
  I6L45_RS03940 (I6L45_03940) - 822198..823445 (-) 1248 WP_216983494.1 aspartate kinase -
  I6L45_RS03945 (I6L45_03945) alaS 823462..826086 (-) 2625 WP_216983495.1 alanine--tRNA ligase -
  I6L45_RS03950 (I6L45_03950) - 826348..826857 (-) 510 WP_216984167.1 regulatory protein RecX -
  I6L45_RS03955 (I6L45_03955) recA 826899..827963 (-) 1065 WP_043757404.1 recombinase RecA Machinery gene
  I6L45_RS03960 (I6L45_03960) pncC 828044..828535 (-) 492 WP_210549458.1 nicotinamide-nucleotide amidase -
  I6L45_RS03965 (I6L45_03965) - 828736..829143 (+) 408 WP_252424076.1 Spy/CpxP family protein refolding chaperone -
  I6L45_RS03970 (I6L45_03970) mutS 829418..831988 (+) 2571 WP_216983496.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38000.54 Da        Isoelectric Point: 4.8988

>NTDB_id=580886 I6L45_RS03955 WP_043757404.1 826899..827963(-) (recA) [Aeromonas sp. FDAARGOS 1415]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKALAGEVEA
KLRELLLSGAAPVEEKASAAEYDEFEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=580886 I6L45_RS03955 WP_043757404.1 826899..827963(-) (recA) [Aeromonas sp. FDAARGOS 1415]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGACATCGAAGCCATCTCCACCGGCTCCCTCTCCCTGGACGTGGCGCTGGGGATCGGCG
GTTTGCCGTGCGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGCAAGACCACGCTGACCCTGCAGGTGATCGCC
GAGGCCCAGAAGAAGGGCAAGACCTGCGCCTTCGTCGATGCGGAGCACGCCCTGGATCCCGTCTACGCCGCCAAGCTGGG
GGTCAATGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAGATCTGTGACATGCTGGTGCGCT
CCAACGCCGTCGACGTCATCATCGTCGACTCCGTGGCCGCCCTGACGCCGAAAGCGGAAATCGAAGGGGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCCCTGCGCAAGTTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTAGCCCGGAGACCACGACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGTCGTACCGGCGCGATCAAGGAAGGGGACGAAGTGGTCGGCAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCTCCCCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAAGAGGGCGAGCTGGTGGACCTGGGGGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTCATGAAGCTCTTCTCCGAGAACAAGGCGCTGGCTGGCGAGGTAGAAGCC
AAGCTGCGCGAGCTGCTGCTCTCCGGTGCTGCGCCGGTGGAGGAGAAAGCCTCCGCCGCCGAGTACGACGAGTTTGAAGC
CGAAAACGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MKG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.204

99.718

0.76
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.204

99.718

0.76
  recA Pseudomonas stutzeri DSM 10701

77.168

97.74

0.754
  recA Acinetobacter baylyi ADP1

71.264

98.305

0.701
  recA Acinetobacter baumannii D1279779

72.647

96.045

0.698
  recA Glaesserella parasuis strain SC1401

70.17

99.435

0.698
  recA Neisseria gonorrhoeae MS11

68.839

99.718

0.686
  recA Neisseria gonorrhoeae MS11

68.839

99.718

0.686
  recA Neisseria gonorrhoeae strain FA1090

68.839

99.718

0.686
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.96

98.023

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Helicobacter pylori 26695

63.692

91.808

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.678

0.576
  recA Streptococcus mutans UA159

58.772

96.61

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

90.113

0.559
  recA Streptococcus pneumoniae TIGR4

61.3

91.243

0.559
  recA Streptococcus pneumoniae Rx1

61.3

91.243

0.559
  recA Streptococcus pneumoniae D39

61.3

91.243

0.559
  recA Streptococcus pneumoniae R6

61.3

91.243

0.559
  recA Streptococcus mitis SK321

60.991

91.243

0.556
  recA Streptococcus mitis NCTC 12261

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.451

92.655

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531