Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6L52_RS05885 Genome accession   NZ_CP077300
Coordinates   1244083..1245147 (+) Length   354 a.a.
NCBI ID   WP_217124861.1    Uniprot ID   -
Organism   Citrobacter braakii strain FDAARGOS 1422     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1239083..1250147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L52_RS05855 (I6L52_05855) srlD 1239253..1240032 (-) 780 WP_003037345.1 sorbitol-6-phosphate dehydrogenase -
  I6L52_RS05860 (I6L52_05860) srlB 1240050..1240412 (-) 363 WP_053389534.1 PTS glucitol/sorbitol transporter subunit IIA -
  I6L52_RS05865 (I6L52_05865) - 1240426..1241397 (-) 972 WP_047357858.1 PTS glucitol/sorbitol transporter subunit IIB -
  I6L52_RS05870 (I6L52_05870) srlA 1241394..1241957 (-) 564 WP_151222397.1 PTS glucitol/sorbitol transporter subunit IIC -
  I6L52_RS05875 (I6L52_05875) mltB 1242222..1243301 (+) 1080 WP_032947148.1 lytic murein transglycosylase B -
  I6L52_RS05880 (I6L52_05880) pncC 1243493..1243990 (+) 498 WP_016154167.1 nicotinamide-nucleotide amidase -
  I6L52_RS05885 (I6L52_05885) recA 1244083..1245147 (+) 1065 WP_217124861.1 recombinase RecA Machinery gene
  I6L52_RS05890 (I6L52_05890) recX 1245217..1245717 (+) 501 WP_016157307.1 recombination regulator RecX -
  I6L52_RS05895 (I6L52_05895) alaS 1245846..1248473 (+) 2628 WP_217124862.1 alanine--tRNA ligase -
  I6L52_RS05900 (I6L52_05900) csrA 1248712..1248897 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38215.57 Da        Isoelectric Point: 4.7651

>NTDB_id=580629 I6L52_RS05885 WP_217124861.1 1244083..1245147(+) (recA) [Citrobacter braakii strain FDAARGOS 1422]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPETAKEI
EKKVRELLLNNPDSKPDFSVDDSGEDVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=580629 I6L52_RS05885 WP_217124861.1 1244083..1245147(+) (recA) [Citrobacter braakii strain FDAARGOS 1422]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACTGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTTGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACCCTGCAGGTT
ATTGCTGCCGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCTGAACACGCGCTGGATCCTGTCTATGCGCGCAA
GCTTGGCGTTGATATCGACAACCTGCTGTGCTCTCAGCCTGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGCGAGATT
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCCATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTACTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCTTCTGTTCGCCTGGATATCCGTCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTTGGT
AGCGAAACCCGTGTTAAGGTCGTGAAAAACAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATTCTTTACGGTGA
AGGTATCAACTTCTACGGCGAACTGGTCGATTTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAGAAAATTGGTCAGGGTAAAGCGAATGCCACTAACTGGCTGAAGGAAAACCCGGAAACTGCGAAGGAAATT
GAGAAGAAAGTACGCGAGTTACTGCTCAATAACCCGGATTCAAAACCAGACTTCTCTGTTGATGACAGCGGTGAAGATGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.792

97.74

0.799
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.792

97.74

0.799
  recA Pseudomonas stutzeri DSM 10701

73.314

96.328

0.706
  recA Glaesserella parasuis strain SC1401

69.801

99.153

0.692
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.39

92.655

0.689
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.09

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.111

88.983

0.633
  recA Latilactobacillus sakei subsp. sakei 23K

58.146

100

0.585
  recA Helicobacter pylori strain NCTC11637

61.128

95.198

0.582
  recA Helicobacter pylori 26695

60.831

95.198

0.579
  recA Streptococcus pneumoniae TIGR4

63.158

91.243

0.576
  recA Streptococcus pneumoniae D39

63.158

91.243

0.576
  recA Streptococcus pneumoniae R6

63.158

91.243

0.576
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.243

0.576
  recA Streptococcus mitis SK321

63.158

91.243

0.576
  recA Streptococcus mitis NCTC 12261

63.158

91.243

0.576
  recA Streptococcus pneumoniae Rx1

63.158

91.243

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.525

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.678

0.556