Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6L53_RS05020 Genome accession   NZ_CP077291
Coordinates   1074241..1075302 (+) Length   353 a.a.
NCBI ID   WP_042322684.1    Uniprot ID   A0A8H9NWM7
Organism   Citrobacter farmeri strain FDAARGOS 1423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069241..1080302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L53_RS04990 (I6L53_04990) srlD 1069451..1070230 (-) 780 WP_042322675.1 sorbitol-6-phosphate dehydrogenase -
  I6L53_RS04995 (I6L53_04995) srlB 1070241..1070603 (-) 363 WP_042322676.1 PTS glucitol/sorbitol transporter subunit IIA -
  I6L53_RS05000 (I6L53_05000) srlE 1070615..1071610 (-) 996 WP_042322678.1 PTS glucitol/sorbitol transporter subunit IIB -
  I6L53_RS05005 (I6L53_05005) srlA 1071607..1072170 (-) 564 WP_042322680.1 PTS glucitol/sorbitol transporter subunit IIC -
  I6L53_RS05010 (I6L53_05010) mltB 1072440..1073519 (+) 1080 WP_042322681.1 lytic murein transglycosylase B -
  I6L53_RS05015 (I6L53_05015) pncC 1073663..1074160 (+) 498 WP_042322683.1 nicotinamide-nucleotide amidase -
  I6L53_RS05020 (I6L53_05020) recA 1074241..1075302 (+) 1062 WP_042322684.1 recombinase RecA Machinery gene
  I6L53_RS05025 (I6L53_05025) recX 1075419..1075919 (+) 501 WP_042322687.1 recombination regulator RecX -
  I6L53_RS05030 (I6L53_05030) alaS 1076048..1078675 (+) 2628 WP_042322690.1 alanine--tRNA ligase -
  I6L53_RS05035 (I6L53_05035) csrA 1079039..1079224 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37959.37 Da        Isoelectric Point: 4.8095

>NTDB_id=580580 I6L53_RS05020 WP_042322684.1 1074241..1075302(+) (recA) [Citrobacter farmeri strain FDAARGOS 1423]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATAWLKDNPATAKEI
EKKVREMLLNNQDAKPDFAVDDGESVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=580580 I6L53_RS05020 WP_042322684.1 1074241..1075302(+) (recA) [Citrobacter farmeri strain FDAARGOS 1423]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGACGTGGAAACGATCTCCACCGGTTCGCTTTCACTGGATATCGCGCTGGGCG
CCGGCGGCCTGCCGATGGGCCGTATCGTCGAAATCTACGGGCCGGAGTCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACATGCGCTGGATCCGATCTATGCGCGCAA
GCTGGGCGTAGATATCGATAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCCCTGGAAATCTGTGACGCGCTGG
CACGTTCTGGTGCCGTTGACGTTATCGTTGTTGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCATATGGGCCTCGCAGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACGGGTGGTA
ACGCACTGAAATTCTATGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATCGCGGCGCCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCATGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCTACAGCCTGGCTGAAAGACAACCCGGCTACCGCGAAGGAAATT
GAGAAGAAAGTCCGCGAAATGCTGCTCAATAACCAGGATGCCAAACCCGACTTCGCCGTTGATGACGGTGAAAGCGTTGC
AGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.081

98.017

0.805
  recA Vibrio cholerae strain A1552

82.081

98.017

0.805
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Acinetobacter baylyi ADP1

74.085

92.918

0.688
  recA Glaesserella parasuis strain SC1401

70.909

93.484

0.663
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae strain FA1090

68.405

92.351

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pyogenes NZ131

62.769

92.068

0.578
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

92.635

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552