Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6L85_RS00615 Genome accession   NZ_CP077248
Coordinates   99870..101021 (+) Length   383 a.a.
NCBI ID   WP_008809971.1    Uniprot ID   A0A139MZF4
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 94870..106021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS00585 (I6L85_00585) - 95334..95837 (-) 504 WP_111724322.1 helix-turn-helix domain-containing protein -
  I6L85_RS00590 (I6L85_00590) ruvA 96005..96598 (+) 594 WP_111724230.1 Holliday junction branch migration protein RuvA -
  I6L85_RS00595 (I6L85_00595) - 96608..97162 (+) 555 WP_111724229.1 DNA-3-methyladenine glycosylase I -
  I6L85_RS00600 (I6L85_00600) - 97167..97826 (+) 660 WP_111724228.1 CPBP family intramembrane glutamic endopeptidase -
  I6L85_RS00605 (I6L85_00605) - 97877..98287 (-) 411 WP_111724227.1 helix-turn-helix domain-containing protein -
  I6L85_RS00610 (I6L85_00610) cinA 98555..99811 (+) 1257 WP_172455856.1 competence/damage-inducible protein A Machinery gene
  I6L85_RS00615 (I6L85_00615) recA 99870..101021 (+) 1152 WP_008809971.1 recombinase RecA Machinery gene
  I6L85_RS00620 (I6L85_00620) spx 101108..101506 (+) 399 WP_008809970.1 transcriptional regulator Spx -
  I6L85_RS00625 (I6L85_00625) - 101652..102224 (+) 573 WP_061585388.1 SP0191 family lipoprotein -
  I6L85_RS00630 (I6L85_00630) - 102336..102602 (+) 267 WP_008809968.1 IreB family regulatory phosphoprotein -
  I6L85_RS00635 (I6L85_00635) ruvX 102602..103021 (+) 420 WP_012131012.1 Holliday junction resolvase RuvX -
  I6L85_RS00640 (I6L85_00640) - 103042..103353 (+) 312 WP_008809966.1 DUF1292 domain-containing protein -
  I6L85_RS00645 (I6L85_00645) - 103604..104842 (+) 1239 WP_008809965.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  I6L85_RS00650 (I6L85_00650) - 104950..105432 (+) 483 WP_008809964.1 SP_0198 family lipoprotein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41290.86 Da        Isoelectric Point: 4.7868

>NTDB_id=580236 I6L85_RS00615 WP_008809971.1 99870..101021(+) (recA) [Streptococcus gordonii strain FDAARGOS 1455]
MAKKQKNLDDITKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAGAWYSYNDEKIGQGSE
NAKKYLADHPEVFDEIDRQVRVRFGLIEDDQEGEATATETAGKITENIEEVTLELDDAIEIEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=580236 I6L85_RS00615 WP_008809971.1 99870..101021(+) (recA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGGCAAAGAAACAAAAGAATCTAGATGATATTACAAAAAAATTTGGAGACGAGCGCCAAAAAGCTTTGGACAACGCCCT
GAAGAACATTGAAAAGGACTTCGGTAAGGGAGCGATTATGCGTCTGGGCGAGCGAGCAGAACAAAAGGTTCAAGTCATGA
GTTCAGGATCTTTGGCCTTGGATATCGCCCTTGGTGCCGGTGGTTATCCTAAGGGACGTATCATTGAAATCTACGGTCCA
GAGTCTTCTGGTAAGACGACTGTTGCCCTTCATGCTGTTGCTCAAGCGCAAAAAGAGGGTGGTATTGCAGCCTTTATTGA
TGCAGAGCACGCTTTGGATCCATCTTACGCGGCTGCTCTAGGTGTAAATATTGATGAGCTGTTGCTATCTCAACCAGATT
CTGGTGAGCAAGGTTTGGAAATTGCAGGAAAATTGATTGACTCTGGTGCAGTTGATTTAGTTGTCATTGACTCCGTTGCA
GCTCTTGTACCACGTGCGGAAATCGATGGCGATATTGGAGATAGCCACGTTGGTCTGCAGGCTCGGATGATGAGTCAGGC
CATGCGTAAACTGTCTGCTTCTATCAATAAAACAAAAACAATTGCCATCTTTATCAACCAACTTCGCGAAAAGGTTGGGG
TTATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGTGCCTTGAAATTCTATGCGTCTGTCCGTTTGGATGTCCGTGGG
AATACTCAAATTAAAGGAACTGGCGATGCTAAGGATACAAATGTTGGTAAGGAAACCAAGATTAAGGTCGTGAAAAACAA
GGTAGCTCCGCCATTTAAAGAAGCCTTCGTGGAAATCATGTATGGAGAAGGAATTTCTAAGACTGGTGAACTGATCAAGA
TTGCAACAGACTTGAATATCATCAAAAAAGCAGGTGCTTGGTATTCTTATAATGACGAGAAGATTGGTCAAGGTTCTGAA
AATGCCAAGAAATATTTGGCAGATCACCCAGAAGTCTTTGACGAAATCGATCGTCAAGTCCGTGTCCGTTTTGGCTTGAT
TGAAGATGATCAAGAAGGGGAAGCAACTGCGACTGAAACTGCAGGAAAAATCACTGAAAACATTGAAGAAGTGACTCTTG
AACTAGACGATGCTATAGAGATCGAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A139MZF4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

88.22

99.739

0.88

  recA Streptococcus mitis NCTC 12261

88.22

99.739

0.88

  recA Streptococcus pneumoniae D39

86.269

100

0.869

  recA Streptococcus pneumoniae R6

86.269

100

0.869

  recA Streptococcus pneumoniae Rx1

86.269

100

0.869

  recA Streptococcus pneumoniae TIGR4

86.269

100

0.869

  recA Streptococcus pyogenes NZ131

85.64

100

0.856

  recA Streptococcus mutans UA159

84.974

100

0.856

  recA Lactococcus lactis subsp. cremoris KW2

78.857

91.384

0.721

  recA Latilactobacillus sakei subsp. sakei 23K

66.209

95.039

0.629

  recA Bacillus subtilis subsp. subtilis str. 168

68.997

85.901

0.593

  recA Neisseria gonorrhoeae MS11

59.544

91.645

0.546

  recA Neisseria gonorrhoeae strain FA1090

59.544

91.645

0.546

  recA Neisseria gonorrhoeae MS11

59.544

91.645

0.546

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.334

0.535

  recA Acinetobacter baylyi ADP1

58.892

89.556

0.527

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

84.856

0.525

  recA Vibrio cholerae strain A1552

61.846

84.856

0.525

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

86.684

0.525

  recA Glaesserella parasuis strain SC1401

58.702

88.512

0.52

  recA Acinetobacter baumannii D1279779

60.923

84.856

0.517

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499

  recA Helicobacter pylori 26695

57.576

86.162

0.496

  recA Helicobacter pylori strain NCTC11637

57.576

86.162

0.496

  recA Pseudomonas stutzeri DSM 10701

57.927

85.64

0.496

  recA Ralstonia pseudosolanacearum GMI1000

59.937

82.768

0.496