Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KSU12_RS06825 Genome accession   NZ_CP077108
Coordinates   1410122..1411261 (+) Length   379 a.a.
NCBI ID   WP_005900747.1    Uniprot ID   X8HYJ1
Organism   Fusobacterium polymorphum strain KCOM1281     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1405122..1416261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSU12_RS06800 (KSU12_06780) - 1405697..1406476 (+) 780 WP_005898431.1 glycosyltransferase family 2 protein -
  KSU12_RS06805 (KSU12_06785) - 1406466..1407485 (+) 1020 WP_032887980.1 glycosyltransferase family 9 protein -
  KSU12_RS06810 (KSU12_06790) - 1407482..1408510 (+) 1029 WP_032887982.1 glycosyltransferase family 9 protein -
  KSU12_RS06815 (KSU12_06795) - 1408503..1409105 (+) 603 WP_032887984.1 lipopolysaccharide core heptose(II) kinase RfaY -
  KSU12_RS06820 (KSU12_06800) - 1409107..1410114 (+) 1008 WP_032887986.1 glycosyltransferase family 9 protein -
  KSU12_RS06825 (KSU12_06805) recA 1410122..1411261 (+) 1140 WP_005900747.1 recombinase RecA Machinery gene
  KSU12_RS06830 (KSU12_06810) - 1411236..1411802 (+) 567 WP_258876603.1 regulatory protein RecX -
  KSU12_RS06835 (KSU12_06815) tsaD 1411799..1412413 (+) 615 Protein_1306 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  KSU12_RS06840 (KSU12_06820) tnpB 1413011..1414114 (+) 1104 WP_220302684.1 IS200/IS605 family element RNA-guided endonuclease TnpB -
  KSU12_RS06845 (KSU12_06825) - 1414224..1414634 (+) 411 Protein_1308 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40585.53 Da        Isoelectric Point: 5.0473

>NTDB_id=579392 KSU12_RS06825 WP_005900747.1 1410122..1411261(+) (recA) [Fusobacterium polymorphum strain KCOM1281]
MAAKKDKSIPDSKITDKEGKEKAVKDAMAAITKGFGSGLIMKLGEKSSMNVESIPTGSINLDIALGIGGVPKGRIIEIYG
AESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSV
AALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVK
KMGTVKQGDDPIGSEVVVKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDIIVKAGSWFSFRDQSIGQGKEKVR
AELETNPELLAQVEADLKEAIAKGPVDKKKKKSKKEVASDDTDDENLEIDDDAVEENND

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=579392 KSU12_RS06825 WP_005900747.1 1410122..1411261(+) (recA) [Fusobacterium polymorphum strain KCOM1281]
ATGGCAGCAAAAAAAGATAAAAGTATCCCAGATTCAAAAATAACAGATAAAGAAGGAAAAGAAAAAGCAGTCAAAGACGC
CATGGCAGCGATTACAAAAGGTTTTGGTTCTGGACTTATTATGAAATTGGGAGAAAAAAGTTCTATGAATGTAGAATCTA
TCCCAACAGGAAGTATAAATTTGGATATAGCTTTAGGAATTGGTGGAGTACCTAAAGGAAGAATTATTGAAATATATGGA
GCAGAAAGCTCAGGTAAGACAACTCTTGCATTACATGTCATAGCTGAAGCACAAAAACAAGGTGGAACAGTTGCATTTAT
TGATGCTGAACATGCACTTGATCCAGTTTATGCAAAAGCATTAGGTGTTGATATAGATGAACTTTTAATTTCTCAACCAG
ACTATGGAGAACAAGCACTTGAAATTGCTGATACTCTTGTTAGATCAGGGGCTATTGATTTAATTGTAATTGACTCAGTT
GCAGCTCTTGTTCCAAAAGCAGAAATAGATGGAGAAATGTCAGATCAACAAATGGGATTACAAGCAAGACTTATGTCAAA
AGGTTTAAGAAAATTGACAGGAAATCTTAACAAATATAAGACTACAATGATTTTTATCAATCAAATCAGAGAAAAAATTG
GTGTAACTTATGGACCTACAACTACAACTACTGGAGGAAAAGCACTTAAATTCTATTCATCAGTTAGAATGGAAGTTAAA
AAGATGGGTACAGTAAAACAAGGTGATGATCCAATAGGAAGTGAAGTTGTTGTAAAAGTAACTAAAAATAAGGTAGCACC
ACCATTTAAAGAAGCAGCATTTGAAATACTATATGGAAAAGGAATTTCAAAGGTTGGAGAAATTATAGATGCAGCTGTTG
CAAAGGATATAATAGTAAAAGCTGGTTCTTGGTTCAGTTTTAGAGACCAAAGTATAGGACAAGGAAAAGAAAAAGTAAGA
GCAGAATTGGAAACAAATCCAGAATTATTAGCACAAGTTGAAGCAGATTTAAAAGAAGCTATTGCAAAAGGTCCTGTTGA
TAAGAAAAAGAAAAAATCTAAAAAAGAAGTTGCTTCTGATGATACTGATGATGAAAATCTTGAAATAGATGATGATGCAG
TTGAAGAAAATAACGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X8HYJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

55.585

99.208

0.551
  recA Acinetobacter baylyi ADP1

59.483

91.821

0.546
  recA Streptococcus mitis NCTC 12261

55.053

99.208

0.546
  recA Streptococcus mutans UA159

55.228

98.417

0.544
  recA Streptococcus pneumoniae Rx1

54.692

98.417

0.538
  recA Streptococcus pneumoniae TIGR4

54.692

98.417

0.538
  recA Streptococcus pneumoniae R6

54.692

98.417

0.538
  recA Streptococcus pneumoniae D39

54.692

98.417

0.538
  recA Streptococcus pyogenes NZ131

55.586

96.834

0.538
  recA Glaesserella parasuis strain SC1401

56.742

93.931

0.533
  recA Acinetobacter baumannii D1279779

62.037

85.488

0.53
  recA Latilactobacillus sakei subsp. sakei 23K

54.571

95.251

0.52
  recA Helicobacter pylori 26695

60.308

85.752

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.478

89.974

0.517
  recA Helicobacter pylori strain NCTC11637

60

85.752

0.515
  recA Lactococcus lactis subsp. cremoris KW2

56.358

91.293

0.515
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.199

83.641

0.512
  recA Bacillus subtilis subsp. subtilis str. 168

60

84.433

0.507
  recA Neisseria gonorrhoeae strain FA1090

59.688

84.433

0.504
  recA Neisseria gonorrhoeae MS11

59.688

84.433

0.504
  recA Neisseria gonorrhoeae MS11

59.688

84.433

0.504
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.232

86.544

0.504
  recA Pseudomonas stutzeri DSM 10701

59.19

84.697

0.501
  recA Ralstonia pseudosolanacearum GMI1000

59.494

83.377

0.496
  recA Vibrio cholerae strain A1552

58.025

85.488

0.496
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.025

85.488

0.496