Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HU754_RS07380 | Genome accession | NZ_CP077090 |
| Coordinates | 1679928..1680983 (+) | Length | 351 a.a. |
| NCBI ID | WP_007908746.1 | Uniprot ID | J3FUG2 |
| Organism | Pseudomonas zeae strain OE 48.2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1639283..1684543 | 1679928..1680983 | within | 0 |
Gene organization within MGE regions
Location: 1639283..1684543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU754_RS07145 (HU754_007145) | - | 1639283..1640179 (-) | 897 | WP_186622048.1 | LysR substrate-binding domain-containing protein | - |
| HU754_RS07150 (HU754_007150) | - | 1640296..1641408 (+) | 1113 | WP_093436558.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| HU754_RS07155 (HU754_007155) | fghA | 1641474..1642319 (+) | 846 | WP_186622050.1 | S-formylglutathione hydrolase | - |
| HU754_RS07160 (HU754_007160) | ispF | 1642363..1642836 (+) | 474 | WP_034149878.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| HU754_RS07165 (HU754_007165) | truD | 1642833..1643891 (+) | 1059 | WP_186622052.1 | tRNA pseudouridine(13) synthase TruD | - |
| HU754_RS07170 (HU754_007170) | surE | 1643879..1644628 (+) | 750 | WP_007908831.1 | 5'/3'-nucleotidase SurE | - |
| HU754_RS07175 (HU754_007175) | - | 1644670..1645305 (+) | 636 | WP_171057346.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| HU754_RS07180 (HU754_007180) | - | 1645518..1646387 (+) | 870 | WP_093436549.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| HU754_RS07185 (HU754_007185) | rpoS | 1646494..1647504 (+) | 1011 | WP_038357938.1 | RNA polymerase sigma factor RpoS | - |
| HU754_RS07190 (HU754_007190) | fdxA | 1648016..1648339 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| HU754_RS07195 (HU754_007195) | mutS | 1648503..1651085 (-) | 2583 | WP_186622054.1 | DNA mismatch repair protein MutS | - |
| HU754_RS07200 (HU754_007200) | - | 1651297..1652031 (+) | 735 | WP_123374600.1 | XRE family transcriptional regulator | - |
| HU754_RS07205 (HU754_007205) | - | 1652558..1652980 (+) | 423 | WP_186622055.1 | tail fiber assembly protein | - |
| HU754_RS07210 (HU754_007210) | - | 1653124..1653471 (+) | 348 | WP_186622057.1 | phage holin family protein | - |
| HU754_RS07215 (HU754_007215) | - | 1653496..1653687 (+) | 192 | WP_186622059.1 | hypothetical protein | - |
| HU754_RS07220 (HU754_007220) | - | 1653778..1654269 (+) | 492 | WP_186622061.1 | phage tail tube protein | - |
| HU754_RS07225 (HU754_007225) | - | 1654278..1654628 (+) | 351 | WP_186622071.1 | phage tail assembly chaperone family protein, TAC | - |
| HU754_RS07230 (HU754_007230) | - | 1654658..1654912 (+) | 255 | WP_186622073.1 | hypothetical protein | - |
| HU754_RS07235 (HU754_007235) | - | 1654969..1656195 (+) | 1227 | WP_186622075.1 | phage tail tape measure protein | - |
| HU754_RS07240 (HU754_007240) | - | 1656233..1656571 (+) | 339 | WP_186622077.1 | phage tail protein | - |
| HU754_RS07245 (HU754_007245) | - | 1656638..1657321 (+) | 684 | WP_186622079.1 | phage minor tail protein L | - |
| HU754_RS07250 (HU754_007250) | - | 1657324..1658127 (+) | 804 | WP_186622081.1 | C40 family peptidase | - |
| HU754_RS07255 (HU754_007255) | - | 1658155..1658760 (+) | 606 | WP_186622083.1 | tail assembly protein | - |
| HU754_RS07260 (HU754_007260) | - | 1658791..1659396 (+) | 606 | WP_186622085.1 | tail assembly protein | - |
| HU754_RS07265 (HU754_007265) | - | 1659465..1663028 (+) | 3564 | WP_186622087.1 | host specificity protein J | - |
| HU754_RS07270 (HU754_007270) | - | 1663078..1663332 (+) | 255 | WP_225919966.1 | hypothetical protein | - |
| HU754_RS07275 (HU754_007275) | - | 1663422..1664222 (+) | 801 | WP_186622091.1 | hypothetical protein | - |
| HU754_RS29370 | - | 1664346..1665560 (+) | 1215 | WP_225919967.1 | hypothetical protein | - |
| HU754_RS07285 (HU754_007285) | - | 1665560..1665877 (+) | 318 | WP_186622093.1 | hypothetical protein | - |
| HU754_RS07290 (HU754_007290) | - | 1665874..1666227 (+) | 354 | WP_186622095.1 | phage tail protein | - |
| HU754_RS07295 (HU754_007295) | - | 1666319..1667287 (+) | 969 | WP_186622096.1 | hypothetical protein | - |
| HU754_RS07300 (HU754_007300) | - | 1667384..1667968 (+) | 585 | WP_186622097.1 | hypothetical protein | - |
| HU754_RS07305 (HU754_007305) | - | 1667965..1668144 (+) | 180 | WP_093436496.1 | DUF2635 domain-containing protein | - |
| HU754_RS07310 (HU754_007310) | - | 1668144..1669640 (+) | 1497 | WP_186622101.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HU754_RS07315 (HU754_007315) | - | 1669708..1670055 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| HU754_RS07320 (HU754_007320) | - | 1670052..1670348 (+) | 297 | WP_007908778.1 | phage tail assembly protein | - |
| HU754_RS07325 (HU754_007325) | - | 1670479..1672050 (+) | 1572 | WP_186622103.1 | phage tail protein | - |
| HU754_RS07330 (HU754_007330) | - | 1672037..1673275 (+) | 1239 | WP_186622104.1 | DNA circularization protein | - |
| HU754_RS07335 (HU754_007335) | - | 1673279..1674328 (+) | 1050 | WP_186622106.1 | phage baseplate assembly protein | - |
| HU754_RS07340 (HU754_007340) | - | 1674390..1674899 (+) | 510 | WP_186622108.1 | phage baseplate assembly protein V | - |
| HU754_RS07345 (HU754_007345) | - | 1674899..1675297 (+) | 399 | WP_186622110.1 | phage GP46 family protein | - |
| HU754_RS07350 (HU754_007350) | - | 1675287..1676330 (+) | 1044 | WP_186622112.1 | baseplate J/gp47 family protein | - |
| HU754_RS07355 (HU754_007355) | - | 1676318..1676917 (+) | 600 | WP_186622114.1 | YmfQ family protein | - |
| HU754_RS07360 (HU754_007360) | - | 1676932..1678092 (+) | 1161 | WP_186622116.1 | tail fiber protein | - |
| HU754_RS07365 (HU754_007365) | - | 1678213..1678779 (+) | 567 | WP_186622118.1 | glycoside hydrolase family 19 protein | - |
| HU754_RS07370 (HU754_007370) | - | 1678758..1679276 (+) | 519 | WP_186622120.1 | lysis system i-spanin subunit Rz | - |
| HU754_RS07375 (HU754_007375) | - | 1679344..1679844 (+) | 501 | WP_186622122.1 | CinA family protein | - |
| HU754_RS07380 (HU754_007380) | recA | 1679928..1680983 (+) | 1056 | WP_007908746.1 | recombinase RecA | Machinery gene |
| HU754_RS07385 (HU754_007385) | recX | 1680992..1681462 (+) | 471 | WP_007908744.1 | recombination regulator RecX | - |
| HU754_RS07390 (HU754_007390) | - | 1681518..1682636 (-) | 1119 | WP_093436427.1 | TIGR00730 family Rossman fold protein | - |
| HU754_RS07395 (HU754_007395) | - | 1682987..1683181 (+) | 195 | WP_077571372.1 | hypothetical protein | - |
| HU754_RS07400 (HU754_007400) | - | 1683182..1683607 (-) | 426 | WP_016985722.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| HU754_RS07405 (HU754_007405) | - | 1683794..1684543 (+) | 750 | WP_099758165.1 | tRNA-uridine aminocarboxypropyltransferase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 37404.95 Da Isoelectric Point: 5.3111
>NTDB_id=579046 HU754_RS07380 WP_007908746.1 1679928..1680983(+) (recA) [Pseudomonas zeae strain OE 48.2]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAVIDSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAVIDSKASAVKETEDDLADADI
Nucleotide
Download Length: 1056 bp
>NTDB_id=579046 HU754_RS07380 WP_007908746.1 1679928..1680983(+) (recA) [Pseudomonas zeae strain OE 48.2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAAGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCT
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCACTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCAGCTCTGGTACCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAAGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAAAAATCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAATCGCCGCGAAGCTTGAGAAA
CAACTGCGTGACAAGCTGCTGACGCCGGCAGTGATCGACTCCAAGGCCTCTGCAGTCAAAGAGACTGAAGACGACCTGGC
CGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAAGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCT
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCACTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCAGCTCTGGTACCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAAGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAAAAATCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAATCGCCGCGAAGCTTGAGAAA
CAACTGCGTGACAAGCTGCTGACGCCGGCAGTGATCGACTCCAAGGCCTCTGCAGTCAAAGAGACTGAAGACGACCTGGC
CGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.