Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KSS95_RS21455 | Genome accession | NZ_CP077073 |
| Coordinates | 4852006..4853073 (-) | Length | 355 a.a. |
| NCBI ID | WP_217849431.1 | Uniprot ID | - |
| Organism | Pseudomonas muyukensis strain COW39 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4846244..4900261 | 4852006..4853073 | within | 0 |
Gene organization within MGE regions
Location: 4846244..4900261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KSS95_RS21415 (KSS95_21415) | finR | 4846244..4847170 (+) | 927 | WP_217849419.1 | LysR family transcriptional regulator FinR | - |
| KSS95_RS21420 (KSS95_21420) | - | 4847174..4847539 (-) | 366 | WP_134689470.1 | diacylglycerol kinase | - |
| KSS95_RS21425 (KSS95_21425) | erdR | 4847618..4848268 (-) | 651 | WP_217849421.1 | response regulator transcription factor ErdR | - |
| KSS95_RS21430 (KSS95_21430) | - | 4848517..4849227 (-) | 711 | WP_217849422.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| KSS95_RS21435 (KSS95_21435) | - | 4849441..4849860 (+) | 420 | WP_217849424.1 | quorum-sensing-regulated virulence factor family protein | - |
| KSS95_RS21440 (KSS95_21440) | - | 4849863..4850069 (-) | 207 | WP_217849426.1 | hypothetical protein | - |
| KSS95_RS21445 (KSS95_21445) | - | 4850358..4851476 (+) | 1119 | WP_217849428.1 | LOG family protein | - |
| KSS95_RS21450 (KSS95_21450) | recX | 4851527..4851997 (-) | 471 | WP_217849430.1 | recombination regulator RecX | - |
| KSS95_RS21455 (KSS95_21455) | recA | 4852006..4853073 (-) | 1068 | WP_217849431.1 | recombinase RecA | Machinery gene |
| KSS95_RS21460 (KSS95_21460) | - | 4853177..4853659 (-) | 483 | WP_217849433.1 | CinA family protein | - |
| KSS95_RS21465 (KSS95_21465) | - | 4853719..4854180 (-) | 462 | WP_217854054.1 | lysis system i-spanin subunit Rz | - |
| KSS95_RS21470 (KSS95_21470) | - | 4854213..4854764 (-) | 552 | WP_217849435.1 | glycoside hydrolase family 19 protein | - |
| KSS95_RS21475 (KSS95_21475) | - | 4854751..4854960 (-) | 210 | WP_217849437.1 | Com family DNA-binding transcriptional regulator | - |
| KSS95_RS21480 (KSS95_21480) | - | 4855279..4856313 (-) | 1035 | WP_217849439.1 | phage late control D family protein | - |
| KSS95_RS21485 (KSS95_21485) | - | 4856351..4856557 (-) | 207 | WP_217849441.1 | tail protein X | - |
| KSS95_RS21490 (KSS95_21490) | - | 4856532..4857377 (-) | 846 | WP_217849442.1 | phage tail protein | - |
| KSS95_RS21495 (KSS95_21495) | - | 4857387..4859681 (-) | 2295 | WP_217849444.1 | hypothetical protein | - |
| KSS95_RS21500 (KSS95_21500) | - | 4859807..4860109 (-) | 303 | WP_217849446.1 | phage tail assembly protein | - |
| KSS95_RS21505 (KSS95_21505) | - | 4860122..4860631 (-) | 510 | WP_217849448.1 | phage major tail tube protein | - |
| KSS95_RS21510 (KSS95_21510) | - | 4860645..4861811 (-) | 1167 | WP_217849450.1 | phage tail sheath family protein | - |
| KSS95_RS21515 (KSS95_21515) | - | 4861932..4862816 (-) | 885 | WP_217849452.1 | phage tail protein | - |
| KSS95_RS21520 (KSS95_21520) | - | 4862813..4863211 (-) | 399 | WP_225935538.1 | phage tail assembly chaperone | - |
| KSS95_RS21525 (KSS95_21525) | - | 4863221..4866211 (-) | 2991 | WP_217849454.1 | phage tail protein | - |
| KSS95_RS21530 (KSS95_21530) | - | 4866204..4866815 (-) | 612 | WP_217849456.1 | phage tail protein I | - |
| KSS95_RS21535 (KSS95_21535) | - | 4866817..4867698 (-) | 882 | WP_217849458.1 | baseplate J/gp47 family protein | - |
| KSS95_RS21540 (KSS95_21540) | - | 4867695..4868021 (-) | 327 | WP_217849460.1 | GPW/gp25 family protein | - |
| KSS95_RS21545 (KSS95_21545) | - | 4868125..4868505 (-) | 381 | WP_225935539.1 | tail fiber assembly protein | - |
| KSS95_RS21550 (KSS95_21550) | - | 4868518..4869738 (-) | 1221 | WP_217849462.1 | pyocin knob domain-containing protein | - |
| KSS95_RS21555 (KSS95_21555) | - | 4870056..4870613 (-) | 558 | WP_217849464.1 | phage baseplate assembly protein V | - |
| KSS95_RS21560 (KSS95_21560) | - | 4871229..4871924 (-) | 696 | WP_217849466.1 | hypothetical protein | - |
| KSS95_RS21565 (KSS95_21565) | - | 4872088..4872300 (+) | 213 | WP_217849468.1 | hypothetical protein | - |
| KSS95_RS21570 (KSS95_21570) | - | 4872365..4872460 (-) | 96 | Protein_4237 | phage baseplate assembly protein V | - |
| KSS95_RS21575 (KSS95_21575) | - | 4872457..4872954 (-) | 498 | WP_217849470.1 | hypothetical protein | - |
| KSS95_RS21580 (KSS95_21580) | - | 4872984..4873526 (-) | 543 | WP_217849472.1 | tail fiber assembly protein | - |
| KSS95_RS21585 (KSS95_21585) | - | 4873528..4874139 (-) | 612 | WP_217849474.1 | hypothetical protein | - |
| KSS95_RS21590 (KSS95_21590) | - | 4874226..4874903 (-) | 678 | WP_217849476.1 | hypothetical protein | - |
| KSS95_RS21595 (KSS95_21595) | - | 4874903..4875226 (-) | 324 | WP_217849478.1 | hypothetical protein | - |
| KSS95_RS21605 (KSS95_21605) | - | 4875242..4879579 (-) | 4338 | WP_225935540.1 | phage tail protein | - |
| KSS95_RS21610 (KSS95_21610) | - | 4879684..4880298 (-) | 615 | WP_217849480.1 | tail assembly protein | - |
| KSS95_RS21615 (KSS95_21615) | - | 4880363..4880953 (-) | 591 | WP_217849482.1 | tail assembly protein | - |
| KSS95_RS21620 (KSS95_21620) | - | 4880994..4881758 (-) | 765 | WP_217849483.1 | C40 family peptidase | - |
| KSS95_RS21625 (KSS95_21625) | - | 4881762..4882508 (-) | 747 | WP_217849485.1 | phage minor tail protein L | - |
| KSS95_RS21630 (KSS95_21630) | - | 4882524..4882856 (-) | 333 | WP_217849487.1 | phage tail protein | - |
| KSS95_RS21635 (KSS95_21635) | - | 4882873..4884138 (-) | 1266 | WP_217849489.1 | phage tail tape measure protein | - |
| KSS95_RS21640 (KSS95_21640) | - | 4884205..4884459 (-) | 255 | WP_217849491.1 | hypothetical protein | - |
| KSS95_RS21645 (KSS95_21645) | - | 4884489..4884839 (-) | 351 | WP_217849493.1 | phage tail assembly chaperone family protein, TAC | - |
| KSS95_RS21650 (KSS95_21650) | - | 4884854..4885345 (-) | 492 | WP_217849495.1 | phage tail tube protein | - |
| KSS95_RS21655 (KSS95_21655) | - | 4885429..4885611 (-) | 183 | WP_217849496.1 | hypothetical protein | - |
| KSS95_RS21660 (KSS95_21660) | - | 4885625..4885978 (-) | 354 | WP_217849498.1 | phage holin family protein | - |
| KSS95_RS21665 (KSS95_21665) | - | 4886007..4886345 (-) | 339 | WP_217849500.1 | hypothetical protein | - |
| KSS95_RS21670 (KSS95_21670) | - | 4886346..4886999 (-) | 654 | WP_217849502.1 | hypothetical protein | - |
| KSS95_RS21675 (KSS95_21675) | - | 4887469..4888215 (-) | 747 | WP_217849504.1 | XRE family transcriptional regulator | - |
| KSS95_RS21680 (KSS95_21680) | mutS | 4888419..4891004 (+) | 2586 | WP_217849506.1 | DNA mismatch repair protein MutS | - |
| KSS95_RS21685 (KSS95_21685) | fdxA | 4891144..4891467 (+) | 324 | WP_217849508.1 | ferredoxin FdxA | - |
| KSS95_RS21690 (KSS95_21690) | rpoS | 4892034..4893041 (-) | 1008 | WP_011535249.1 | RNA polymerase sigma factor RpoS | - |
| KSS95_RS21695 (KSS95_21695) | - | 4893147..4894001 (-) | 855 | WP_217849510.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| KSS95_RS21700 (KSS95_21700) | - | 4894183..4894821 (-) | 639 | WP_217854058.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| KSS95_RS21705 (KSS95_21705) | surE | 4894860..4895609 (-) | 750 | WP_217849512.1 | 5'/3'-nucleotidase SurE | - |
| KSS95_RS21710 (KSS95_21710) | truD | 4895597..4896655 (-) | 1059 | WP_217849514.1 | tRNA pseudouridine(13) synthase TruD | - |
| KSS95_RS21715 (KSS95_21715) | ispF | 4896652..4897125 (-) | 474 | WP_217849516.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| KSS95_RS21720 (KSS95_21720) | fghA | 4897280..4898134 (-) | 855 | WP_217849518.1 | S-formylglutathione hydrolase | - |
| KSS95_RS21725 (KSS95_21725) | - | 4898144..4899256 (-) | 1113 | WP_217849519.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| KSS95_RS21730 (KSS95_21730) | - | 4899365..4900261 (+) | 897 | WP_217849521.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37616.93 Da Isoelectric Point: 5.3117
>NTDB_id=578648 KSS95_RS21455 WP_217849431.1 4852006..4853073(-) (recA) [Pseudomonas muyukensis strain COW39]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGTEIEK
QIREKLLTSGAVAAAAKAAAAEADADDLADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGTEIEK
QIREKLLTSGAVAAAAKAAAAEADADDLADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=578648 KSS95_RS21455 WP_217849431.1 4852006..4853073(-) (recA) [Pseudomonas muyukensis strain COW39]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCCATTCCTGCCATCTCCACCGGTTCCCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GCCTGCCGAAGGGCCGTATCGTCGAGATCTATGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTCTCGGTCATCGCC
GAAGCCCAGAAGAACGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCCCTCGACCCCGAGTACGCCGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATCCTGTACGGCAAGGGTAT
CTACCGCAACGGCGAAATCATCGACCTGGGCGTTTCCCAGGGCCTGGTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCTGCCAAGTACCTGCAAGAGAACCCGGCCATCGGCACCGAGATCGAGAAG
CAGATCCGCGAGAAGCTGCTGACCTCGGGTGCCGTGGCTGCTGCTGCCAAGGCTGCTGCTGCCGAGGCCGATGCCGACGA
CCTGGCCGACGCCGACGCCGGTTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCCATTCCTGCCATCTCCACCGGTTCCCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GCCTGCCGAAGGGCCGTATCGTCGAGATCTATGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTCTCGGTCATCGCC
GAAGCCCAGAAGAACGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCCCTCGACCCCGAGTACGCCGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATCCTGTACGGCAAGGGTAT
CTACCGCAACGGCGAAATCATCGACCTGGGCGTTTCCCAGGGCCTGGTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCTGCCAAGTACCTGCAAGAGAACCCGGCCATCGGCACCGAGATCGAGAAG
CAGATCCGCGAGAAGCTGCTGACCTCGGGTGCCGTGGCTGCTGCTGCCAAGGCTGCTGCTGCCGAGGCCGATGCCGACGA
CCTGGCCGACGCCGACGCCGGTTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.