Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KR767_RS00875 Genome accession   NZ_CP077072
Coordinates   181354..182400 (-) Length   348 a.a.
NCBI ID   WP_250877806.1    Uniprot ID   -
Organism   Luteibacter anthropi strain SM7.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176354..187400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR767_RS00850 (KR767_00850) - 176934..177338 (-) 405 WP_166947259.1 globin -
  KR767_RS00860 (KR767_00860) csrA 177659..177856 (-) 198 WP_250877803.1 carbon storage regulator CsrA -
  KR767_RS00865 (KR767_00865) alaS 178159..180792 (-) 2634 WP_250877804.1 alanine--tRNA ligase -
  KR767_RS00870 (KR767_00870) - 180858..181373 (-) 516 WP_250877805.1 regulatory protein RecX -
  KR767_RS00875 (KR767_00875) recA 181354..182400 (-) 1047 WP_250877806.1 recombinase RecA Machinery gene
  KR767_RS00880 (KR767_00880) - 182490..182966 (-) 477 WP_243853128.1 CinA family protein -
  KR767_RS00885 (KR767_00885) - 184236..184619 (+) 384 WP_250877807.1 toxin co-regulated pilus biosynthesis Q family protein -
  KR767_RS00890 (KR767_00890) - 184633..185592 (+) 960 WP_250877808.1 VirB8/TrbF family protein -
  KR767_RS00895 (KR767_00895) - 185655..186404 (+) 750 WP_250879204.1 TrbG/VirB9 family P-type conjugative transfer protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37371.39 Da        Isoelectric Point: 5.0726

>NTDB_id=578613 KR767_RS00875 WP_250877806.1 181354..182400(-) (recA) [Luteibacter anthropi strain SM7.4]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRVDDQIDTVSTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLQAIA
SCQRGGGTAAFVDAEHALDPSYAEKLGVNVADLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAIANEVDA
ELRARLLVKPGNSNSASNDTEQDEAEEA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=578613 KR767_RS00875 WP_250877806.1 181354..182400(-) (recA) [Luteibacter anthropi strain SM7.4]
ATGGACGACAATAAGCGCAAGGCGCTGGCCAGCGCCCTTGGCCAGATCGAGAAACAGTTCGGCAAGGGTGCCGTGATGCG
TCTTGGCGACCGGGTCGACGACCAGATCGACACCGTGTCGACTGGTTCACTGGGTCTCGACATCGCCCTCGGCATCGGCG
GCCTGCCTCGCGGCCGCATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTTACCCTGCAGGCCATCGCT
TCGTGCCAGCGCGGTGGCGGCACGGCGGCCTTCGTGGATGCCGAGCACGCACTTGATCCGTCCTACGCCGAAAAGCTGGG
CGTCAACGTGGCCGACCTGCTGGTCAGCCAGCCGGATACCGGCGAACAGGCGCTCGAAATCGCCGACATGCTCGTGCGCT
CCGGCGCCGTCGACATGGTGGTGGTCGACTCCGTGGCAGCACTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAC
TCCCACGTGGGTCTGCACGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACGGCCAACATCAAGAAGTCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCATCGGCGCAGTGAAGAAGGGCGAGGAAGTCATCGGCTCCGAA
ACCCGCGTGAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGACCGAATTCGAGATCCTCTACGGCGAGGGCAC
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTTCGCGAGAACCTCATCGACAAGTCCGGCGCGTGGTACAGCTACAAGG
GCGACCGCATCGGCCAGGGCAAGGAAAACGTCCGCCAGTTCCTGCGTGACAACCCGGCCATTGCCAACGAAGTCGATGCC
GAACTGCGCGCGCGCCTGCTCGTGAAGCCGGGCAACAGCAACAGCGCCTCGAACGACACCGAGCAGGATGAGGCCGAGGA
AGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.015

96.264

0.741
  recA Acinetobacter baylyi ADP1

72.595

98.563

0.716
  recA Neisseria gonorrhoeae strain FA1090

70.402

100

0.704
  recA Neisseria gonorrhoeae MS11

70.402

100

0.704
  recA Neisseria gonorrhoeae MS11

70.402

100

0.704
  recA Vibrio cholerae strain A1552

70.029

99.713

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.029

99.713

0.698
  recA Ralstonia pseudosolanacearum GMI1000

69.034

100

0.698
  recA Acinetobacter baumannii D1279779

70.76

98.276

0.695
  recA Glaesserella parasuis strain SC1401

68.314

98.851

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.655

100

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

95.977

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

66.562

91.954

0.612
  recA Helicobacter pylori strain NCTC11637

64.506

93.103

0.601
  recA Helicobacter pylori 26695

64.198

93.103

0.598
  recA Streptococcus mutans UA159

59.259

100

0.598
  recA Streptococcus pneumoniae R6

58.382

99.425

0.58
  recA Streptococcus pneumoniae TIGR4

58.382

99.425

0.58
  recA Streptococcus pneumoniae Rx1

58.382

99.425

0.58
  recA Streptococcus pneumoniae D39

58.382

99.425

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

62.733

92.529

0.58
  recA Streptococcus pyogenes NZ131

60.976

94.253

0.575
  recA Streptococcus mitis SK321

58.358

97.989

0.572
  recA Streptococcus mitis NCTC 12261

60.429

93.678

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.006

95.115

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.317

92.529

0.549