Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KQ254_RS10765 Genome accession   NZ_CP076807
Coordinates   2242305..2243354 (-) Length   349 a.a.
NCBI ID   WP_017725240.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237305..2248354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS10730 (KQ254_10695) - 2237546..2238049 (+) 504 WP_001037943.1 OmpH family outer membrane protein -
  KQ254_RS10735 (KQ254_10700) lpxD 2238054..2239124 (+) 1071 WP_000868103.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  KQ254_RS10740 (KQ254_10705) fabZ 2239131..2239616 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KQ254_RS10745 (KQ254_10710) lpxA 2239613..2240401 (+) 789 WP_000064875.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  KQ254_RS10750 (KQ254_10715) - 2240457..2241341 (-) 885 WP_017725239.1 YbgF trimerization domain-containing protein -
  KQ254_RS10760 (KQ254_10725) - 2241769..2242251 (-) 483 WP_000476756.1 regulatory protein RecX -
  KQ254_RS10765 (KQ254_10730) recA 2242305..2243354 (-) 1050 WP_017725240.1 recombinase RecA Machinery gene
  KQ254_RS10770 (KQ254_10735) - 2243500..2243940 (-) 441 WP_017725241.1 S4 domain-containing protein -
  KQ254_RS10775 (KQ254_10740) - 2243924..2244610 (-) 687 WP_017725242.1 HAD-IA family hydrolase -
  KQ254_RS10780 (KQ254_10745) - 2244782..2245141 (+) 360 WP_000798357.1 YcgJ family protein -
  KQ254_RS10785 (KQ254_10750) - 2245240..2245476 (+) 237 WP_000525041.1 hypothetical protein -
  KQ254_RS10790 (KQ254_10755) - 2245591..2245884 (+) 294 WP_000689662.1 hypothetical protein -
  KQ254_RS10795 (KQ254_10760) - 2245936..2246472 (-) 537 WP_017725244.1 GNAT family N-acetyltransferase -
  KQ254_RS10800 (KQ254_10765) gigD 2246519..2246968 (-) 450 WP_001046785.1 Lrp/AsnC family transcriptional regulator GigD -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37875.29 Da        Isoelectric Point: 4.8457

>NTDB_id=578101 KQ254_RS10765 WP_017725240.1 2242305..2243354(-) (recA) [Acinetobacter baumannii strain UC20804]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPVLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=578101 KQ254_RS10765 WP_017725240.1 2242305..2243354(-) (recA) [Acinetobacter baumannii strain UC20804]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTGGCTGCACTTACACCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAATGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTTGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAAAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGTTCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.427

100

0.994
  recA Acinetobacter baylyi ADP1

92.795

99.427

0.923
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Ralstonia pseudosolanacearum GMI1000

70.642

93.696

0.662
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus pyogenes NZ131

62.154

93.123

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539